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3.8k
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Comment: C: Does anybody success to download data using icgc-storage-client ?
6.6 years ago by morovatunc ▴ 560
0
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1
reply
1.3k
views
Comment: C: Starrseq data how can I characterise reads that maps out of the targeted regions
6.6 years ago by morovatunc ▴ 560
0
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0
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1.3k
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Comment: C: Starrseq data how can I characterise reads that maps out of the targeted regions
6.6 years ago by morovatunc ▴ 560
2
votes
5
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1.3k
views
Starrseq data how can I characterise reads that maps out of the targeted regions.
alignment sequencing mapping starrseq
6.6 years ago by morovatunc ▴ 560
0
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0
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2.9k
views
Comment: C: Simplest output format of blast contamination check
6.8 years ago by morovatunc ▴ 560
0
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0
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2.9k
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Comment: C: Simplest output format of blast contamination check
6.8 years ago by morovatunc ▴ 560
0
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2
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2.9k
views
Comment: C: Simplest output format of blast contamination check
6.8 years ago by morovatunc ▴ 560
9
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8
replies
2.9k
views
Simplest output format of blast contamination check
blast megablast
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 560
0
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0
replies
2.3k
views
Bedtools -shuffle uniformly distributed bed regions
bedtools
updated 6.8 years ago by 20 • written 8.5 years ago by ▴ 560
0
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0
replies
1.5k
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Comment: C: Sub-typing patients by a single gene's expression in TCGA dataset.
6.8 years ago by morovatunc ▴ 560
3
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4
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1.5k
views
Sub-typing patients by a single gene's expression in TCGA dataset.
RNA-Seq TCGA
updated 6.8 years ago by ★ 2.2k • written 6.8 years ago by ▴ 560
0
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1
reply
1.2k
views
Designed primers with 3 bp mutations (codons) how to validate/visualize them?
blast bwa primer
6.8 years ago by morovatunc ▴ 560
0
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1
reply
1.7k
views
Answer: A: detecting mutations in cancer samples belonging to the same cancer type
6.8 years ago by morovatunc ▴ 560
0
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0
replies
2.2k
views
BWA aligner parameter tweaking to show primer mapping
bwa primer-design
6.9 years ago by morovatunc ▴ 560
4
votes
5
replies
6.9k
views
Chip-Seq Peak height difference between BED and BW file formats.
ChIP-Seq
updated 3.6 years ago by 44k • written 8.9 years ago by ▴ 560
0
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0
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6.3k
views
Comment: C: Extract Cg Dinucleotides Coordinates From (Human) Genome
7.5 years ago by morovatunc ▴ 560
0
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0
replies
2.4k
views
Comment: C: Regular Expression help for (bcf/vcf)tools filter manipulation
7.5 years ago by morovatunc ▴ 560
38
votes
19
replies
11k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 19 months ago by 44k • written 8.6 years ago by ▴ 560
0
votes
0
replies
1.4k
views
How should I compare multiple TF methylation percentages?
methylation encode TF
7.5 years ago by morovatunc ▴ 560
5
votes
2
replies
2.4k
views
Regular Expression help for (bcf/vcf)tools filter manipulation
vcftools bcftools
updated 7.5 years ago by ★ 2.8k • written 7.5 years ago by ▴ 560
1
vote
1
reply
2.6k
views
Comment: C: 1000g database with wrong variant annotation?
7.5 years ago by morovatunc ▴ 560
1
vote
1
reply
3.8k
views
Answer: A: Does anybody success to download data using icgc-storage-client ?
7.6 years ago by morovatunc ▴ 560
3
votes
6
replies
1.7k
views
Could you suggest me a proper feature selection method for mixed type variable data?
machine learning
updated 7.6 years ago by • 0 • written 7.6 years ago by ▴ 560
0
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0
replies
1.7k
views
Comment: C: Could you suggest me a proper feature selection method for mixed type variable d
7.6 years ago by morovatunc ▴ 560
0
votes
0
replies
11k
views
Comment: C: Overlapping regions in a BedGraph file
7.6 years ago by morovatunc ▴ 560
0
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0
replies
12k
views
Comment: C: pheatmap vs. manual hclust with different results
7.6 years ago by morovatunc ▴ 560
0
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1
reply
3.5k
views
Comment: C: Somatic variant call
7.6 years ago by morovatunc ▴ 560
0
votes
0
replies
21k
views
Comment: C: TCGA UUIDS to TCGA barcode (SampleID) in R
7.6 years ago by morovatunc ▴ 560
0
votes
0
replies
1.4k
views
Comment: C: about Mapability and Blacklisted regions?
7.7 years ago by morovatunc ▴ 560
1
vote
0
replies
1.7k
views
Comment: C: Varriant Annotation-exporting results
7.7 years ago by morovatunc ▴ 560
3
votes
2
replies
1.4k
views
about Mapability and Blacklisted regions?
mapability ucsc
updated 7.7 years ago by 104k • written 7.7 years ago by ▴ 560
0
votes
1
reply
1.7k
views
Comment: C: Varriant Annotation-exporting results
7.7 years ago by morovatunc ▴ 560
1
vote
0
replies
1.5k
views
Proving spesific TF binding locations have mutation enrichment than rest of the binding sites statistically
ChIP-Seq Stat
7.7 years ago by morovatunc ▴ 560
0
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0
replies
1.3k
views
Checking TF binding region proximity mutational signature
mutation signature statistics
updated 7.7 years ago by 20 • written 7.7 years ago by ▴ 560
0
votes
0
replies
1.6k
views
ENCODE DNAse 1 HyperSensitivity Data - Signal of unique reads vs Base Overlap Signal vs Raw Signal
ENCODE
7.7 years ago by morovatunc ▴ 560
0
votes
0
replies
2.3k
views
Comment: C: Repeatmasker Annotation Descriptions
7.9 years ago by morovatunc ▴ 560
0
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1
reply
2.3k
views
Comment: C: Repeatmasker Annotation Descriptions
7.9 years ago by morovatunc ▴ 560
1
vote
4
replies
2.3k
views
Repeatmasker Annotation Descriptions
repeatmasker UCSC
updated 7.9 years ago by 20 • written 7.9 years ago by ▴ 560
0
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0
replies
2.3k
views
Comment: C: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.9 years ago by morovatunc ▴ 560
0
votes
0
replies
2.3k
views
Comment: C: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.9 years ago by morovatunc ▴ 560
0
votes
0
replies
1.7k
views
Comment: C: How can I go over a bed region based on peak name in UCSC Genome Browser?
7.9 years ago by morovatunc ▴ 560
0
votes
1
reply
1.7k
views
Comment: C: How can I set a feature based on a single mutation in specific location?
7.9 years ago by morovatunc ▴ 560
0
votes
1
reply
1.7k
views
Comment: C: How can I set a feature based on a single mutation in specific location?
7.9 years ago by morovatunc ▴ 560
0
votes
1
reply
1.7k
views
Comment: C: How can I set a feature based on a single mutation in specific location?
7.9 years ago by morovatunc ▴ 560
0
votes
7
replies
1.7k
views
How can I set a feature based on a single mutation in specific location?
VCFTOOLS
7.9 years ago by morovatunc ▴ 560
0
votes
1
reply
1.7k
views
How can I go over a bed region based on peak name in UCSC Genome Browser?
UCSC BED
8.0 years ago by morovatunc ▴ 560
3
votes
5
replies
2.3k
views
How analyse chip-exo paired read data and get BigWig or Peaks called?
bedtools bed
updated 8.0 years ago by ▴ 580 • written 8.0 years ago by ▴ 560
0
votes
0
replies
1.6k
views
Visualisation of Multiple Alignment Files (MAFs) with IGV
IGV UCSC
8.0 years ago by morovatunc ▴ 560
0
votes
0
replies
2.1k
views
Visualisation of Binding Motifs on IGV (or any browser)
TF binding motif IGV
8.0 years ago by morovatunc ▴ 560
1
vote
1
reply
1.9k
views
Comment: C: Galaxy installation on AWS and charges
8.0 years ago by morovatunc ▴ 560
207 results • Page 2 of 5
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