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842
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Comment: C: about GWAS studies and causal variants
5.5 years ago by Shicheng Guo ★ 9.6k
4
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1
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1.3k
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IMPACT rating in VEP and compatibility with which tools?
VEP impact rating
updated 5.5 years ago by ★ 2.4k • written 5.5 years ago by ★ 9.6k
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0
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3.0k
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Comment: C: snpEff: Fatal error reading file the input VCF files and stop runing
5.5 years ago by Shicheng Guo ★ 9.6k
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0
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2.9k
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Comment: C: Question on SnpSift Filter
5.5 years ago by Shicheng Guo ★ 9.6k
2
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2
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3.0k
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snpEff: Fatal error reading file the input VCF files and stop runing
snpEff fetal error
5.5 years ago by Shicheng Guo ★ 9.6k
0
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1
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18k
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Comment: C: Where Can I Download The Public Version Of The The Human Gene Mutation Database
5.5 years ago by Shicheng Guo ★ 9.6k
0
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1
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2.0k
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Comment: C: Single cell rnaseq analysis pipeline available
5.5 years ago by Shicheng Guo ★ 9.6k
0
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0
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1.2k
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Tutorial: Apply ALoFT to identify loss-of-function somatic or germline variants
ALoFT
updated 20 months ago by 44k • written 5.5 years ago by ★ 9.6k
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0
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5.3k
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How to apply vcftools --diff to identify vcf-specific variants/records
vcftools --diff --diff-site
5.5 years ago by Shicheng Guo ★ 9.6k
1
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4
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1.2k
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Script: VCF to 3 base mutation pattern
vcf
5.5 years ago by Shicheng Guo ★ 9.6k
0
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0
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1.2k
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Comment: C: Script: VCF to 3 base mutation pattern
5.5 years ago by Shicheng Guo ★ 9.6k
0
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0
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18k
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Answer: A: How to install and Load xlsx package in RStudio usind Windows10
5.5 years ago by Shicheng Guo ★ 9.6k
0
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0
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1.2k
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ALoFT: Annotation of Loss-of-Function Transcripts: Installation
ALoFT
5.5 years ago by Shicheng Guo ★ 9.6k
0
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0
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1.4k
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Answer: A: Region of Interest Information in TCGA Histopathological Image
5.5 years ago by Shicheng Guo ★ 9.6k
1
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1
reply
1.4k
views
unauthorized: authentication required error in ensembl-vep installation
VEP VEP (Variant Effect Predictor)
5.5 years ago by Shicheng Guo ★ 9.6k
1
vote
1
reply
921
views
database for putative human loss-of-function variants
putative loss-of-function variants LOF ALoFT
updated 5.5 years ago by 27k • written 5.5 years ago by ★ 9.6k
2
votes
2
replies
1.2k
views
Protocol to process TCGA image data (SVS format): diagnostic or slides
tcga image protocol
updated 5.5 years ago by 44k • written 5.5 years ago by ★ 9.6k
0
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1
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8.6k
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Comment: C: Is SNPeff still the standard for variant effect prediction?
5.5 years ago by Shicheng Guo ★ 9.6k
1
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0
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8.6k
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Answer: A: Is SNPeff still the standard for variant effect prediction?
5.5 years ago by Shicheng Guo ★ 9.6k
5
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4
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2.4k
views
Software and algorithm for identification of tissue-specific express genes
software algorithm tissue specific genes
updated 5.5 years ago by ▴ 100 • written 8.8 years ago by ★ 9.6k
4
votes
4
replies
1.3k
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Forum: What skills are required for an informatics scientist?
informatics scientist
updated 18 months ago by 44k • written 5.5 years ago by ★ 9.6k
2
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3
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1.4k
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How to find motif enrichment with IUPAC DNA fragment?
motif dna
updated 5.6 years ago by • 0 • written 6.4 years ago by ★ 9.6k
1
vote
1
reply
787
views
Most important methods, algorithms and softwares for clinical image data analysis
clinial image data analysis
5.6 years ago by Shicheng Guo ★ 9.6k
0
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0
replies
6.9k
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Comment: C: GEOquery getGEO() Error in open.connection(x, "rb") : HTTP error 403.
5.6 years ago by Shicheng Guo ★ 9.6k
1
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0
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3.2k
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Answer: A: Adding branch lengths to a topology
5.6 years ago by Shicheng Guo ★ 9.6k
1
vote
0
replies
7.0k
views
Answer: A: Extract gene names from annotated vcf file
5.6 years ago by Shicheng Guo ★ 9.6k
1
vote
0
replies
1.1k
views
SGT and Genotype in strelka output
strelka SGT genotype
5.6 years ago by Shicheng Guo ★ 9.6k
0
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1
reply
13k
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Comment: A: TMB Tumor Mutation Burden
5.6 years ago by Shicheng Guo ★ 9.6k
0
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0
replies
5.4k
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Answer: A: Getting all Ensembl protein lengths
5.7 years ago by Shicheng Guo ★ 9.6k
0
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0
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2.5k
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Comment: C: Integrating EHR data with genomic data
5.7 years ago by Shicheng Guo ★ 9.6k
11
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5
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27k
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Tutorial: Y-DNA and mtDNA Haplogroup Predictor
haplogroup
updated 20 months ago by 44k • written 6.4 years ago by ★ 9.6k
0
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0
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1.1k
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Comment: C: How to predict SOX11 binding regions without ChIP-seq data
5.7 years ago by Shicheng Guo ★ 9.6k
3
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2
replies
1.1k
views
How to predict SOX11 binding regions without ChIP-seq data
SOX11
5.7 years ago by Shicheng Guo ★ 9.6k
7
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5
replies
1.9k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 18 months ago by 44k • written 5.7 years ago by ★ 9.6k
0
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1
reply
685
views
723 Cancer Gene Census Genes
723 Cancer Gene Census Genes
5.7 years ago by Shicheng Guo ★ 9.6k
0
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1
reply
2.1k
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Comment: C: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
5.7 years ago by Shicheng Guo ★ 9.6k
0
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3
replies
2.1k
views
Forum: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
GEO EGA
updated 18 months ago by 44k • written 5.7 years ago by ★ 9.6k
0
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0
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985
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Comment: C: H3K27ac peaks identification from UCSC hg19 annotation database
5.7 years ago by Shicheng Guo ★ 9.6k
0
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1
reply
985
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H3K27ac peaks identification from UCSC hg19 annotation database
H3K27ac peak input
5.7 years ago by Shicheng Guo ★ 9.6k
0
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2
replies
8.7k
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Comment: C: Multiplexed Pair-End Sequences -- Barcode Sorting
5.7 years ago by Shicheng Guo ★ 9.6k
0
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0
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1.5k
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Comment: C: multiplexed sequencing and multi-library designs
5.7 years ago by Shicheng Guo ★ 9.6k
0
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0
replies
5.6k
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Comment: C: How to generate barcodes for HiSeq
5.7 years ago by Shicheng Guo ★ 9.6k
0
votes
1
reply
7.8k
views
Comment: C: Annotation of ID from TCGA gene expression data
5.8 years ago by Shicheng Guo ★ 9.6k
1
vote
2
replies
1.8k
views
gnomAD and Bravo to download loss-of-function annotation
gnomAD Bravo loss-of-function
updated 5.8 years ago by 20 • written 6.1 years ago by ★ 9.6k
0
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0
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4.6k
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Comment: C: Evolution of Biostars
5.8 years ago by Shicheng Guo ★ 9.6k
0
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0
replies
74k
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Comment: C: What Is The Best Pipeline For Human Whole Exome Sequencing?
5.8 years ago by Shicheng Guo ★ 9.6k
3
votes
2
replies
1.3k
views
MAGI, cBioPortal, GATK, Genepattern, MuTect, Oncotater, MutSigCV
cBioPortal MutSigCV MAGI MuTect
updated 20 months ago by 44k • written 5.8 years ago by ★ 9.6k
1
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1
reply
5.4k
views
Comment: A: A list of human cell cycle genes for Seurat
5.8 years ago by Shicheng Guo ★ 9.6k
0
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0
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15k
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Comment: A: Search dbSNP for hg19 based coordinates
5.8 years ago by Shicheng Guo ★ 9.6k
12
votes
9
replies
3.5k
views
Fast way to return genomic regions for 10,000 SNPs in rsID
SNP rsid bed
5.8 years ago by Shicheng Guo ★ 9.6k
854 results • Page 8 of 18
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