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Comment: C: Tool that can split genes into groups with similar expression pattern overtime
6.3 years ago by salamandra ▴ 550
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1
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2.9k
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Comment: C: Tool that can split genes into groups with similar expression pattern overtime
6.3 years ago by salamandra ▴ 550
0
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0
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2.9k
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Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
0
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1
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2.9k
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Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
0
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1
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2.9k
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Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
0
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1
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2.9k
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Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
1
vote
1
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810
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How to automatically retrieve genes of preselected enzymes in a pathway map?
gene
updated 6.3 years ago by ▴ 300 • written 6.3 years ago by ▴ 550
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3.3k
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Comment: C: Know if a pathway is being functionally activated or repressed by a group of up-
6.3 years ago by salamandra ▴ 550
9
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8
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3.3k
views
7 follow
Know if a pathway is being functionally activated or repressed by a group of up-regulated genes
RNA-Seq text-mining gene set enrichment
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 550
0
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0
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3.3k
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Comment: C: Know if a pathway is being functionally activated or repressed by a group of up-
6.3 years ago by salamandra ▴ 550
0
votes
1
reply
2.9k
views
Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
0
votes
1
reply
2.9k
views
Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
0
votes
1
reply
2.9k
views
Comment: C: Deseq2: What is the most correct experimental design for this experiment?
6.3 years ago by salamandra ▴ 550
4
votes
14
replies
2.9k
views
Deseq2: What is the most correct experimental design for this experiment?
Deseq2 experimental design RNA-seq
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 550
1
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0
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6.5k
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Comment: C: Homer error (findMotifs.pl) : are you sure you chose the right length for motif
6.3 years ago by salamandra ▴ 550
3
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2
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6.5k
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Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
Chip-seq motifs homer
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 550
0
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1
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
6.3 years ago by salamandra ▴ 550
0
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1
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
6.3 years ago by salamandra ▴ 550
0
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1
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
6.3 years ago by salamandra ▴ 550
0
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1
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
6.3 years ago by salamandra ▴ 550
0
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0
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
6.3 years ago by salamandra ▴ 550
0
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1
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
6.3 years ago by salamandra ▴ 550
0
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0
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2.3k
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Comment: C: How to mask motif in HOMER?
6.3 years ago by salamandra ▴ 550
0
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1
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5.3k
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Comment: C: How to use a specific promoter set on findMotifs.pl of HOMER?
updated 6.3 years ago by 147k • written 6.3 years ago by ▴ 550
4
votes
4
replies
2.3k
views
How to mask motif in HOMER?
mask motif chip-seq homer
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 550
3
votes
14
replies
5.3k
views
How to use a specific promoter set on findMotifs.pl of HOMER?
ChIP-Seq HOMER promoter set motifs
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 550
0
votes
0
replies
1.8k
views
ChIP-seq: To use IDR, samples have to pass both tests or is it enough to pass the pseudo-replicate test?
ChIP-Seq IDR
6.3 years ago by salamandra ▴ 550
2
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0
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1.4k
views
Answer: A: Why when splitting file in two we add 1 line before dividing the number of lines
6.3 years ago by salamandra ▴ 550
4
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3
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1.4k
views
Why when splitting file in two we add 1 line before dividing the number of lines by 2?
split commandline bash
6.3 years ago by salamandra ▴ 550
2
votes
4
replies
3.9k
views
RNA-seq: Should remove duplicates in all samples of same experiment although some do not have technical duplicates?
RNA-Seq duplication dupRadar
updated 6.3 years ago by 35k • written 6.4 years ago by ▴ 550
0
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0
replies
1.5k
views
Comment: C: Does Bowtie2 index use haplotypes and patches? and is the reference genome of Bo
6.3 years ago by salamandra ▴ 550
3
votes
1
reply
2.4k
views
How to calculate effective genome size using unique-kmers.py from khmer program?
effective genome size khmer ChIP-Seq
6.3 years ago by salamandra ▴ 550
1
vote
1
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2.0k
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What parameter values to change in peak calling with MACS2 when calculating IDR afterwards?
ChIP-Seq MACS2 IDR
6.3 years ago by salamandra ▴ 550
0
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1
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1.5k
views
Comment: C: Does Bowtie2 index use haplotypes and patches? and is the reference genome of Bo
6.3 years ago by salamandra ▴ 550
2
votes
4
replies
1.5k
views
Does Bowtie2 index use haplotypes and patches? and is the reference genome of Bowtie2 from UCSC or ensembl?
ChIP-Seq haplotypes scaffolds Bowtie2 ensembl
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 550
0
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0
replies
3.6k
views
Comment: C: What is chr EBV in human sam file?
6.3 years ago by salamandra ▴ 550
0
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1
reply
3.6k
views
Comment: C: What is chr EBV in human sam file?
6.3 years ago by salamandra ▴ 550
0
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0
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2.0k
views
Comment: C: Can we compare peaks of different transcription factors when they were obtained
6.3 years ago by salamandra ▴ 550
0
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0
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1.8k
views
What tool should be used to determine IDR or Np/Nt and N1/N2 between ChIP-seq samples?
ChIP-Seq IDR ENCODE
6.3 years ago by salamandra ▴ 550
1
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0
replies
3.0k
views
Answer: A: How to select a gene annotation file in ensembl that contain un-localized scaffo
6.3 years ago by salamandra ▴ 550
1
vote
1
reply
3.0k
views
How to select a gene annotation file in ensembl that contain un-localized scaffolds, but NO patches or haplotypes?
assembly RNA-Seq STAR genome
6.3 years ago by salamandra ▴ 550
0
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1
reply
4.3k
views
Comment: C: Why do peak shifts occur?
6.3 years ago by salamandra ▴ 550
3
votes
1
reply
1.7k
views
RNA-seq: Can we obtain distances between samples of different experiments?
RNA-Seq sample clustering
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 550
0
votes
2
replies
5.2k
views
Comment: C: Questions regarding VST/rlog correction to plot sample distances between RNA-seq
6.4 years ago by salamandra ▴ 550
11
votes
4
replies
5.2k
views
Questions regarding VST/rlog correction to plot sample distances between RNA-seq samples
RNA-Seq R DEseq
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 550
5
votes
2
replies
1.9k
views
Does importing HTseqcounts with txtimport corrects for gene length?
RNA-Seq deseq R
updated 6.4 years ago by 104k • written 6.4 years ago by ▴ 550
0
votes
0
replies
3.9k
views
Comment: C: RNA-seq: Should remove duplicates in all samples of same experiment although som
6.4 years ago by salamandra ▴ 550
0
votes
0
replies
9.4k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.4 years ago by salamandra ▴ 550
0
votes
0
replies
9.4k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.4 years ago by salamandra ▴ 550
0
votes
2
replies
9.4k
views
Comment: C: Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with
6.4 years ago by salamandra ▴ 550
211 results • Page 2 of 5
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