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67
votes
15
replies
46k
views
13 follow
Get chromosome sizes from fasta file
genome ucsc
updated 3 months ago by ★ 1.9k • written 8.8 years ago by ▴ 750
0
votes
1
reply
1.1k
views
Bedtools genomecov option to keep columns 4-6?
genomecov bed bedtools
updated 2.1 years ago by • 0 • written 4.5 years ago by ▴ 750
1
vote
2
replies
3.5k
views
Comment: Comment: Need help to remove NA values from data frame
3.2 years ago by rioualen ▴ 750
1
vote
1
reply
3.5k
views
Answer: Answer: Need help to remove NA values from data frame
3.2 years ago by rioualen ▴ 750
1
vote
1
reply
810
views
A regex to convert operon names to genes?
regex r gene operon
updated 3.2 years ago by ★ 2.8k • written 3.2 years ago by ▴ 750
0
votes
0
replies
2.5k
views
Answer: Answer: Where to download a table of operons with genes for E. coli?
3.2 years ago by rioualen ▴ 750
5
votes
1
reply
1.6k
views
Answer: Answer: How to combine a data frame with another data frame containing comma-separated v
3.2 years ago by rioualen ▴ 750
4
votes
7
replies
2.4k
views
can't run Aracne -- Java error
aracne RNA-Seq network
updated 3.4 years ago by ▴ 740 • written 4.3 years ago by ▴ 750
1
vote
7
replies
4.1k
views
Using the Homer suite with conda
homer conda bioconda
updated 3.8 years ago by 20 • written 7.5 years ago by ▴ 750
3
votes
1
reply
2.4k
views
Answer: A: can't run Aracne -- Java error
4.3 years ago by rioualen ▴ 750
0
votes
0
replies
2.4k
views
Comment: C: can't run Aracne -- Java error
4.3 years ago by rioualen ▴ 750
0
votes
1
reply
2.4k
views
Comment: C: can't run Aracne -- Java error
4.3 years ago by rioualen ▴ 750
0
votes
1
reply
2.0k
views
Comment: C: Generate sequence alignment and heatmap for TF binding sites
4.7 years ago by rioualen ▴ 750
0
votes
3
replies
2.0k
views
Generate sequence alignment and heatmap for TF binding sites
alignment ChIP-Seq logo heatmap
updated 4.7 years ago by 10k • written 4.7 years ago by ▴ 750
0
votes
2
replies
13k
views
Comment: C: Modern software for whole genome alignment visualization
4.8 years ago by rioualen ▴ 750
0
votes
0
replies
2.1k
views
Comment: C: Fusing arrays with equal dimmensions
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 750
1
vote
1
reply
2.1k
views
Answer: A: Fusing arrays with equal dimmensions
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 750
1
vote
1
reply
7.4k
views
Comment: C: Empty output from MACS2 when using control
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 750
2
votes
1
reply
4.0k
views
Answer: A: Looking for ways to download ChIP-seq datasets programmatically in a pipeline
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 750
0
votes
0
replies
4.2k
views
Comment: C: Building sequence logo from uneven sequences
5.4 years ago by rioualen ▴ 750
0
votes
1
reply
4.2k
views
Comment: C: Building sequence logo from uneven sequences
5.4 years ago by rioualen ▴ 750
1
vote
10
replies
4.2k
views
Building sequence logo from uneven sequences
logo alignment fasta ggseqlogo weblogo
5.4 years ago by rioualen ▴ 750
0
votes
0
replies
4.2k
views
Comment: C: Building sequence logo from uneven sequences
5.4 years ago by rioualen ▴ 750
0
votes
1
reply
4.2k
views
Comment: C: Building sequence logo from uneven sequences
5.4 years ago by rioualen ▴ 750
0
votes
1
reply
4.2k
views
Comment: C: Building sequence logo from uneven sequences
5.4 years ago by rioualen ▴ 750
0
votes
0
replies
46k
views
Comment: C: Get chromosome sizes from fasta file
updated 5.6 years ago by 44k • written 8.8 years ago by ▴ 750
30
votes
2
replies
46k
views
Answer: C: Get chromosome sizes from fasta file
updated 5.6 years ago by 44k • written 8.8 years ago by ▴ 750
0
votes
0
replies
37k
views
Comment: C: Trimming adapter sequences - is it necessary?
5.6 years ago by rioualen ▴ 750
0
votes
2
replies
37k
views
Comment: C: Trimming adapter sequences - is it necessary?
5.6 years ago by rioualen ▴ 750
0
votes
0
replies
3.0k
views
Comment: C: Download data from GEO/SRA using link
5.6 years ago by rioualen ▴ 750
3
votes
2
replies
3.0k
views
Download data from GEO/SRA using link
sra fastq geo
updated 5.6 years ago by 147k • written 5.6 years ago by ▴ 750
1
vote
0
replies
4.8k
views
Comment: C: Possible reason for no peaks generated by MACS2
6.1 years ago by rioualen ▴ 750
1
vote
4
replies
2.1k
views
Bedtools window: getting feature from bedfile instead of GFF3 file
bedtools window
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 750
3
votes
2
replies
2.4k
views
GC content biases in RNA-seq data of A.thaliana
RNA-Seq GC Athaliana mapping
7.1 years ago by rioualen ▴ 750
0
votes
0
replies
14k
views
Comment: C: Extract basic info from fastq files in an efficient way?
7.2 years ago by rioualen ▴ 750
0
votes
0
replies
14k
views
Comment: C: Extract basic info from fastq files in an efficient way?
7.2 years ago by rioualen ▴ 750
0
votes
1
reply
14k
views
Comment: C: Extract basic info from fastq files in an efficient way?
7.2 years ago by rioualen ▴ 750
14
votes
8
replies
14k
views
Extract basic info from fastq files in an efficient way?
fastq fastqc
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 750
2
votes
0
replies
4.3k
views
Answer: A: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
7.2 years ago by rioualen ▴ 750
10
votes
11
replies
4.3k
views
"Segmentation fault (core dumped)" using sickle for trimming, depending on options used
trimming sickle virtual-machine
7.2 years ago by rioualen ▴ 750
0
votes
1
reply
4.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
7.4 years ago by rioualen ▴ 750
1
vote
1
reply
4.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
7.4 years ago by rioualen ▴ 750
1
vote
0
replies
4.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
7.4 years ago by rioualen ▴ 750
1
vote
0
replies
4.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
7.4 years ago by rioualen ▴ 750
1
vote
1
reply
4.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
7.4 years ago by rioualen ▴ 750
7
votes
4
replies
4.0k
views
Merge bed files, keep the peak count
bedtools bedops ChIP-Seq
updated 7.4 years ago by 20 • written 8.4 years ago by ▴ 750
0
votes
0
replies
4.1k
views
Comment: C: Using the Homer suite with conda
7.5 years ago by rioualen ▴ 750
0
votes
1
reply
4.1k
views
Comment: C: Using the Homer suite with conda
7.5 years ago by rioualen ▴ 750
0
votes
2
replies
4.1k
views
Comment: C: Using the Homer suite with conda
7.5 years ago by rioualen ▴ 750
0
votes
1
reply
14k
views
Comment: C: Differences between trimming tools: cutadapt, bbduk and sickle
7.6 years ago by rioualen ▴ 750
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