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850
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Comment: C: How to solve the problem related to unmatched chromosome identifiers?
3.9 years ago by Fabio Marroni ★ 3.0k
0
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1
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1.2k
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Comment: C: minor allele frequency graph
4.0 years ago by Fabio Marroni ★ 3.0k
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0
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1.7k
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Answer: A: How to annotate the snps we get after GWAS?
4.0 years ago by Fabio Marroni ★ 3.0k
0
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1
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1.8k
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Comment: C: Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' fo
4.0 years ago by Fabio Marroni ★ 3.0k
0
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1
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1.4k
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Comment: C: GO enrichment: enriched term was not assigned to all genes in functional annotat
4.0 years ago by Fabio Marroni ★ 3.0k
0
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1
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1.4k
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Comment: C: Correlation between 2 deseq2 outputs? how to best do it?
4.0 years ago by Fabio Marroni ★ 3.0k
2
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0
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1.5k
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Answer: A: what is environmental sample (Taxonomy ID: 61964) in NCBI?
4.0 years ago by Fabio Marroni ★ 3.0k
1
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0
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5.7k
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Comment: C: how to caculate enrichment score
4.1 years ago by Fabio Marroni ★ 3.0k
1
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1
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2.2k
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Answer: C: Blastdbcmd (Windows) - Too Many Positional Arguments
4.1 years ago by Fabio Marroni ★ 3.0k
0
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1
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2.3k
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Answer: A: Can't find fstat() and pairwise.fstat()
4.1 years ago by Fabio Marroni ★ 3.0k
1
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1
reply
2.4k
views
Comment: C: Samtools faidx not printing reverse complement
4.3 years ago by Fabio Marroni ★ 3.0k
0
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0
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2.8k
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Comment: C: samtools subsampling reads
4.3 years ago by Fabio Marroni ★ 3.0k
0
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1
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2.8k
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Comment: C: samtools subsampling reads
4.3 years ago by Fabio Marroni ★ 3.0k
0
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0
replies
643
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Comment: C: Using a script to create a binary file. Help with arguments
4.3 years ago by Fabio Marroni ★ 3.0k
0
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0
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981
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Comment: C: Salmon indexing directory missing files?
4.4 years ago by Fabio Marroni ★ 3.0k
0
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0
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2.2k
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Comment: C: Strange Mean-Variance plot after Voom Normalization (RNAseq)
4.4 years ago by Fabio Marroni ★ 3.0k
2
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1
reply
3.7k
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Comment: C: Role of large/small sample size in adjusting p-value
4.4 years ago by Fabio Marroni ★ 3.0k
0
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1
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2.4k
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Comment: C: ERROR:Error in x[seq_len(n)] : object of type 'S4' is not subsettable
4.4 years ago by Fabio Marroni ★ 3.0k
0
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0
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3.7k
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Comment: C: Why sortmerna 4.2.0 runs so slow?
4.6 years ago by Fabio Marroni ★ 3.0k
0
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1
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3.7k
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Comment: C: Why sortmerna 4.2.0 runs so slow?
4.6 years ago by Fabio Marroni ★ 3.0k
0
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1
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2.3k
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Answer: A: Reproduction eQTL GTex Box plot
4.7 years ago by Fabio Marroni ★ 3.0k
4
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4
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4.2k
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Retrieving phytozome data using the R bioconductor package biomaRt
R bioconductor phytozome biomart biomaRt
updated 3.3 years ago by ★ 2.1k • written 7.2 years ago by ★ 3.0k
0
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0
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869
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Answer: C: How to extract coverage of custom target regions (bed file) from a bam file?
4.7 years ago by Fabio Marroni ★ 3.0k
1
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0
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995
views
Comment: C: How to covert RKPM into absolute quantification?
4.7 years ago by Fabio Marroni ★ 3.0k
1
vote
0
replies
720
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Answer: A: Question about the correlation coefficient for Linkage Disequilibrium (LD)
4.7 years ago by Fabio Marroni ★ 3.0k
1
vote
0
replies
2.0k
views
Answer: A: Adjusting the Fst values for different sample sizes
4.7 years ago by Fabio Marroni ★ 3.0k
1
vote
0
replies
4.5k
views
Comment: C: Ballgown finds few DE genes compared to DESeq
4.7 years ago by Fabio Marroni ★ 3.0k
1
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0
replies
3.2k
views
Comment: C: The genotype imputation in Beagle always stop on specific step and can not finis
4.8 years ago by Fabio Marroni ★ 3.0k
2
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1
reply
3.2k
views
Comment: C: The genotype imputation in Beagle always stop on specific step and can not finis
4.8 years ago by Fabio Marroni ★ 3.0k
0
votes
0
replies
913
views
Comment: C: issues using Value Matching command in R
4.8 years ago by Fabio Marroni ★ 3.0k
1
vote
1
reply
3.4k
views
Comment: C: STAR ALIGNMENT: FATAL ERROR in reads input: short read sequence line: 0
4.8 years ago by Fabio Marroni ★ 3.0k
0
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1
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5.1k
views
Comment: C: Is there a limit to the p-value & q-value for cuffdiff gene_exp.diff?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 3.0k
0
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0
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3.9k
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Answer: A: CNV analysis using the ExomeDepth R Package
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 3.0k
0
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0
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2.3k
views
Comment: C: what does allele frequency changes mean through multiple pairwise comparisons?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 3.0k
0
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1
reply
2.0k
views
Comment: C: What can be causing my very odd data?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 3.0k
1
vote
0
replies
1.9k
views
Comment: C: Length of RNAseq reads
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 3.0k
0
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0
replies
3.0k
views
Comment: C: Cuffnorm: FPKM values of Genes also appearing among isoforms (but with different
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 3.0k
0
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0
replies
6.5k
views
Comment: C: Error message running admixture in WSL (Ubuntu) : Segmentation fault (core dumpe
5.0 years ago by Fabio Marroni ★ 3.0k
1
vote
2
replies
6.5k
views
Comment: C: Error message running admixture in WSL (Ubuntu) : Segmentation fault (core dumpe
5.0 years ago by Fabio Marroni ★ 3.0k
1
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0
replies
3.3k
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Answer: A: rRNA contamination in poly A-enriched libraries
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 3.0k
2
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1
reply
3.8k
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Comment: C: Beta coefficient is positive, but potential SNP effect size is negative
5.1 years ago by Fabio Marroni ★ 3.0k
0
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0
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2.0k
views
Comment: C: Limma/edgeR or other for metagenomic (non-RNA) data?
5.1 years ago by Fabio Marroni ★ 3.0k
0
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1
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2.0k
views
Answer: A: Limma/edgeR or other for metagenomic (non-RNA) data?
5.1 years ago by Fabio Marroni ★ 3.0k
1
vote
0
replies
9.4k
views
Comment: C: HISAT2 MAPQ scoring scheme
5.1 years ago by Fabio Marroni ★ 3.0k
5
votes
0
replies
20k
views
Answer: A: Extracting Subsets Of Reads From A Bam File
updated 5.1 years ago by 44k • written 10.0 years ago by ★ 3.0k
0
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1
reply
6.5k
views
Answer: A: Build Phylogenetic Trees From Bam Files
updated 5.1 years ago by 44k • written 11.0 years ago by ★ 3.0k
0
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0
replies
19k
views
Comment: C: Sample Sam File
updated 5.1 years ago by 44k • written 8.2 years ago by ★ 3.0k
0
votes
1
reply
19k
views
Comment: C: Sample Sam File
updated 5.1 years ago by 44k • written 9.9 years ago by ★ 3.0k
0
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0
replies
19k
views
Comment: C: Sample Sam File
updated 5.1 years ago by 44k • written 9.9 years ago by ★ 3.0k
1
vote
1
reply
19k
views
Comment: Comment: Sample Sam File
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 3.0k
468 results • Page 2 of 10
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