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Comment: Comment: Count regions that overlap with python
2.3 years ago by Alex Reynolds 36k
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Answer: Answer: Count regions that overlap with python
2.3 years ago by Alex Reynolds 36k
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Answer: Answer: Best formats for storing large amounts of data for random access
2.3 years ago by Alex Reynolds 36k
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Answer: Answer: Visualization of trascription factor family grouped by biological function
2.4 years ago by Alex Reynolds 36k
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Comment: Comment: How Can I Know The Length Of Mapped Reads From Bam File?
2.4 years ago by Alex Reynolds 36k
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Answer: Answer: GFF to BED conversion
2.4 years ago by Alex Reynolds 36k
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Answer: Answer: Mapping chromosome location to gene ID
2.5 years ago by Alex Reynolds 36k
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Answer: Answer: Comparing bed files for shifts and enlargements
2.5 years ago by Alex Reynolds 36k
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Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
2.5 years ago by Alex Reynolds 36k
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Answer: Answer: How to create bed file from list of variants with indels and bp values
2.5 years ago by Alex Reynolds 36k
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Comment: Comment: sliding windows over genome
2.5 years ago by Alex Reynolds 36k
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Comment: Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
2.5 years ago by Alex Reynolds 36k
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Answer: Answer: sliding windows over genome
2.5 years ago by Alex Reynolds 36k
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Comment: Comment: Finding Chip Seq Overlaps with Bed files
2.5 years ago by Alex Reynolds 36k
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
2.5 years ago by Alex Reynolds 36k
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Answer: Answer: How to interpret similar motifs in Homer results
2.5 years ago by Alex Reynolds 36k
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Comment: Comment: Why the bed file not recognized as a bed file
2.6 years ago by Alex Reynolds 36k
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1.7k
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Answer: Answer: Why the bed file not recognized as a bed file
2.6 years ago by Alex Reynolds 36k
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Answer: Answer: Circos plot
2.6 years ago by Alex Reynolds 36k
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Answer: Answer: SARS-CoV-2 genome on NCBI website
2.6 years ago by Alex Reynolds 36k
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1.6k
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Answer: Answer: deeptools plotHeatMap - Convert bed files to gene list?
2.7 years ago by Alex Reynolds 36k
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1.6k
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Comment: Comment: deeptools plotHeatMap - Convert bed files to gene list?
2.7 years ago by Alex Reynolds 36k
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988
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Comment: Comment: Find genes of interest in large unannotated genome files
2.7 years ago by Alex Reynolds 36k
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How to iterate over rows of pyranges object
pyranges
updated 2.7 years ago by ▴ 10 • written 3.7 years ago by 36k
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988
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Answer: Answer: Find genes of interest in large unannotated genome files
2.7 years ago by Alex Reynolds 36k
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913
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Answer: Answer: bedtools -u not giving unique files
2.7 years ago by Alex Reynolds 36k
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Answer: Answer: How to convert .wib files to .wig or .bed?
2.8 years ago by Alex Reynolds 36k
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931
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Comment: Comment: Determining the transcription factor activators for a particular gene
2.8 years ago by Alex Reynolds 36k
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Answer: Answer: Map genomic coordinate to specific chromosome region
2.8 years ago by Alex Reynolds 36k
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Answer: Answer: TET2 Binding Motifs BED file
2.8 years ago by Alex Reynolds 36k
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965
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Comment: Comment: Non-zero return code 127 from
2.8 years ago by Alex Reynolds 36k
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Answer: Answer: Tips and tricks to improve data visualization in bioinformatics
2.8 years ago by Alex Reynolds 36k
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Comment: Comment: Mince a vcf into n bins of a given range
2.8 years ago by Alex Reynolds 36k
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Answer: Answer: Mince a vcf into n bins of a given range
2.8 years ago by Alex Reynolds 36k
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Answer: Answer: Change the interval of bed file
2.8 years ago by Alex Reynolds 36k
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Answer: Answer: How to create specific .bed files for a panel of genes
2.9 years ago by Alex Reynolds 36k
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1.7k
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Answer: Answer: Merge two multi-chromosome WIG files
2.9 years ago by Alex Reynolds 36k
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3.4k
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Answer: Answer: Getting peak heights from TF chIP-seq data (wig file)
2.9 years ago by Alex Reynolds 36k
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Answer: Answer: Random Subset of Individuals from .BED File (.ped not available)
2.9 years ago by Alex Reynolds 36k
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977
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Answer: Answer: are there some software to compute depth？
2.9 years ago by Alex Reynolds 36k
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1.4k
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Answer: Answer: Annotating genes from the coordinates of variants of a VCF file
2.9 years ago by Alex Reynolds 36k
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4.3k
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Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
2.9 years ago by Alex Reynolds 36k
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1
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1.2k
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Comment: Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
2.9 years ago by Alex Reynolds 36k
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1.4k
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Answer: Answer: How to describe an insertion in BED format file?
2.9 years ago by Alex Reynolds 36k
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2.5k
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Comment: Comment: To create a multi fasta file which contains each gene's exons
2.9 years ago by Alex Reynolds 36k
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997
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.9 years ago by Alex Reynolds 36k
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2.5k
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Comment: Comment: To create a multi fasta file which contains each gene's exons
2.9 years ago by Alex Reynolds 36k
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2.5k
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Answer: Answer: To create a multi fasta file which contains each gene's exons
2.9 years ago by Alex Reynolds 36k
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1.3k
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Answer: Answer: Plotting a long string of (x,y) values as a chromosome
2.9 years ago by Alex Reynolds 36k
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0
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1.4k
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Comment: Comment: Create junctions from Bed file for IGV visualization
3.0 years ago by Alex Reynolds 36k
2,885 results • Page 3 of 58
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