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2
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1.5k
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Answer: Answer: PRSice-2 without Ref SNP ID
3.2 years ago by Lemire ▴ 940
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0
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1.6k
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Comment: Comment: Volcano plot not centered at origin
3.2 years ago by Lemire ▴ 940
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0
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699
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Comment: Comment: Where is genotype calls in this dataset?
3.2 years ago by Lemire ▴ 940
3
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0
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1.8k
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Answer: Answer: When running pca with GCTA, why are there the same number of eigenvalues as the
3.2 years ago by Lemire ▴ 940
1
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0
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913
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Answer: Answer: normality assumption for GWAS QT
3.3 years ago by Lemire ▴ 940
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0
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1.4k
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Comment: Comment: Performing population stratification based on GWA tutorial
3.3 years ago by Lemire ▴ 940
2
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1
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1.4k
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Answer: Answer: GWASpower calculation
3.3 years ago by Lemire ▴ 940
1
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1
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2.4k
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Comment: Comment: SNP Pruning Through PCA (Edit: Feature Selection Through PCA)
3.3 years ago by Lemire ▴ 940
1
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1
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2.4k
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Answer: Answer: SNP Pruning Through PCA
3.3 years ago by Lemire ▴ 940
1
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1
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936
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Comment: Comment: Making sense of genotype calculation equations
3.3 years ago by Lemire ▴ 940
2
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0
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1.9k
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Answer: Answer: Why do I get a big log fold change but small mean change in b value when plottin
3.3 years ago by Lemire ▴ 940
1
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0
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2.7k
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Comment: Comment: How do I log into this ftp server and look around?
3.3 years ago by Lemire ▴ 940
1
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0
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2.7k
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Answer: Answer: How do I log into this ftp server and look around?
3.3 years ago by Lemire ▴ 940
0
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0
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846
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Comment: Comment: How to conduct a genomic SEM with GxE term and term for G effect on E?
3.4 years ago by Lemire ▴ 940
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0
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3.6k
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Comment: Comment: How to calculate R2 from GWAS summary statistics?
3.4 years ago by Lemire ▴ 940
0
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1
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955
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Answer: Answer: alternatives to replication for GWAS
3.4 years ago by Lemire ▴ 940
0
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0
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1.2k
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Answer: Answer: How can I do hypothesis test for continuous dependent variable and two categoric
3.4 years ago by Lemire ▴ 940
3
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1
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1.5k
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Answer: Answer: Very high Beta coefficients in --glm output in plink2
3.4 years ago by Lemire ▴ 940
2
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0
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3.1k
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Answer: Answer: GCTA make GRM error contains illegal chr number
3.4 years ago by Lemire ▴ 940
1
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1
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963
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Comment: Comment: Duplicate markers
3.5 years ago by Lemire ▴ 940
1
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1
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1.6k
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Comment: Comment: KING relatedness inference working way too long...
3.5 years ago by Lemire ▴ 940
0
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0
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2.4k
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Answer: Answer: Correcting for multiple testing: 12 multiple regressions, with several covariate
3.5 years ago by Lemire ▴ 940
1
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0
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1.4k
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Answer: Answer: PLINK Clumping d-prime or r2?
3.5 years ago by Lemire ▴ 940
0
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2
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3.2k
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Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
3.5 years ago by Lemire ▴ 940
2
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1
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3.6k
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Answer: Answer: How to produce a heatmap by keeping the original data and a log color scale?
3.6 years ago by Lemire ▴ 940
0
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0
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1.7k
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Answer: Answer: How to find the standard error when the GWAS summary data does not provide?
3.6 years ago by Lemire ▴ 940
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0
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2.5k
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Answer: Answer: How to connect HLA alleles with rsID?
3.6 years ago by Lemire ▴ 940
0
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2
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996
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Comment: Comment: Plink: Number of Samples reducing after merging multiple bed,bim,fam files with
3.6 years ago by Lemire ▴ 940
0
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1
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1.5k
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Answer: Answer: How to produce overlapping QQ-plot from GWAS results?
3.6 years ago by Lemire ▴ 940
0
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0
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1.7k
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Comment: C: 450k CpG strands in hg38
4.4 years ago by Lemire ▴ 940
1
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0
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2.6k
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Comment: C: Correcting the Negative beta coefficient (genetic risk score )
4.4 years ago by Lemire ▴ 940
1
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0
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1.8k
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Comment: C: Can Plink 1.07 set-hh-missing output VCF?
4.4 years ago by Lemire ▴ 940
0
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1
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4.2k
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Answer: A: GT 2/3, or 3/3 or 2/2 in vcf
4.6 years ago by Lemire ▴ 940
0
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1
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1.3k
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Comment: C: Boxplots and Time Series Data
4.6 years ago by Lemire ▴ 940
1
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0
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949
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Answer: A: Adding dosage for a SNP as a covariate to a phenotype file
4.6 years ago by Lemire ▴ 940
0
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1
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1.0k
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Comment: C: How to perform classical HLA alleles association analysis
4.6 years ago by Lemire ▴ 940
0
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1
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4.1k
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Answer: A: IDAT to VCF conversion
4.6 years ago by Lemire ▴ 940
1
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0
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2.8k
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Comment: C: What is the relationship between PLINK --pca and --mds-plot in terms of % varian
4.7 years ago by Lemire ▴ 940
3
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1
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2.8k
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Comment: C: What is the relationship between PLINK --pca and --mds-plot in terms of % varian
4.7 years ago by Lemire ▴ 940
2
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1
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3.0k
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Answer: A: Meta-Analysis effect size is not in the same direction as GWAS effect sizes.
4.7 years ago by Lemire ▴ 940
1
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1
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923
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Comment: C: Population Genetics: Identity by State measure
4.8 years ago by Lemire ▴ 940
0
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0
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1.9k
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Comment: C: how to fix this error: duplicate 'row.names' are not allowed read.table
4.8 years ago by Lemire ▴ 940
0
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0
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1.4k
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Answer: A: GCTA tool for case-control association analysis
4.8 years ago by Lemire ▴ 940
0
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1
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2.9k
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Comment: Comment: Log-transformation, coefficient of variation, standard error and mass-spectromet
updated 11 months ago by 44k • written 4.8 years ago by ▴ 940
1
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1
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825
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Answer: A: Variant association analysis with both related and unrelated individuals
4.8 years ago by Lemire ▴ 940
2
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1
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1.2k
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Comment: C: Missing snps in PRSice
4.9 years ago by Lemire ▴ 940
3
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0
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7.0k
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Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 940
1
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2
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3.4k
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Answer: A: LOD score of a single genotype
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 940
0
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0
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3.1k
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Answer: A: Armitage's trend test for the 2x3 genotype table
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 940
0
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1
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15k
views
Answer: A: BWA mem how to know if a read is mapped uniquely?
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 940
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