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51
votes
15
replies
71k
views
12 follow
Sequence Number Count In Fastq.Gz File
counts sequence fastq
updated 21 months ago by 44k • written 13.4 years ago by ★ 1.7k
29
votes
28
replies
37k
views
11 follow
Split Fastq Files Into Chunks Of 1M Reads
split fastq
updated 7 months ago by • 0 • written 13.3 years ago by ★ 1.7k
21
votes
8
replies
4.3k
views
6 follow
Cnv Visualization
cnv visualization
updated 3.0 years ago by ▴ 60 • written 13.1 years ago by ★ 1.7k
9
votes
5
replies
17k
views
Is Human_G1K_V37.Fasta Hg19?
hg
updated 3.7 years ago by ▴ 280 • written 13.1 years ago by ★ 1.7k
9
votes
3
replies
17k
views
What Is Pcr Duplicates Of Ngs?
duplicates markduplicates
updated 4.5 years ago by 20 • written 12.9 years ago by ★ 1.7k
0
votes
0
replies
7.8k
views
Comment: C: Softwares For Calculation Of Genome-Wide Alignments Coverage
updated 5.2 years ago by 44k • written 12.9 years ago by ★ 1.7k
0
votes
0
replies
17k
views
Comment: C: Extract One-End Mapped Paired-End Reads From Bwa Bam/Sam Files.
updated 5.2 years ago by 44k • written 13.0 years ago by ★ 1.7k
0
votes
0
replies
8.3k
views
Comment: C: Write Script To Combine All Steps Of Bwa
updated 5.2 years ago by 44k • written 13.4 years ago by ★ 1.7k
3
votes
6
replies
9.8k
views
How To Filter Against Common Snp Database To Look For Rare Variants?
snp samtools
updated 6.4 years ago by 20 • written 12.7 years ago by ★ 1.7k
8
votes
5
replies
12k
views
Soft-Clipped Vs Unmapped?
bwa
updated 3.0 years ago by 44k • written 12.7 years ago by ★ 1.7k
41
votes
2
replies
9.6k
views
Burrow-Wheeler Alignment
bwa alignment bowtie
updated 8.2 years ago by 20 • written 13.3 years ago by ★ 1.7k
11
votes
2
replies
6.9k
views
Validated Copy Number Variation(Cnv) Standard
structural cnv
updated 23 months ago by 44k • written 13.2 years ago by ★ 1.7k
15
votes
12
replies
18k
views
10 follow
Can I Access Bam File Information Without Converting To Sam?
bam sam
updated 9.8 years ago by 20 • written 13.3 years ago by ★ 1.7k
13
votes
3
replies
3.7k
views
Find Gene Symbol/Gene Name According To Orf Accession
gene
updated 9.9 years ago by 20 • written 12.9 years ago by ★ 1.7k
24
votes
8
replies
47k
views
Convert .Txt File To Bed File
bed
updated 10.4 years ago by ▴ 270 • written 13.2 years ago by ★ 1.7k
11
votes
11
replies
17k
views
6 follow
Extract One-End Mapped Paired-End Reads From Bwa Bam/Sam Files.
samtools pindel
updated 3.0 years ago by 44k • written 13.0 years ago by ★ 1.7k
8
votes
4
replies
5.6k
views
Snp Filtering After Being Called.
snp filter samtools gatk
updated 11.3 years ago by 14k • written 12.7 years ago by ★ 1.7k
106
votes
12
replies
83k
views
7 follow
Bedtools Compare Multiple Bed Files?
bedtools intersect
updated 2.1 years ago by 44k • written 13.1 years ago by ★ 1.7k
0
votes
0
replies
14k
views
Comment: C: Gatk Multi-Sample Calling
12.6 years ago by Bioscientist ★ 1.7k
1
vote
2
replies
4.9k
views
Calling Of Mutil-Allelic Snp Using Gatk
gatk snp
updated 12.7 years ago by 14k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
14k
views
Comment: C: Gatk Multi-Sample Calling
12.7 years ago by Bioscientist ★ 1.7k
6
votes
6
replies
14k
views
Gatk Multi-Sample Calling
gatk
updated 12.7 years ago by 3.5k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
9.8k
views
Comment: C: How To Filter Against Common Snp Database To Look For Rare Variants?
12.7 years ago by Bioscientist ★ 1.7k
4
votes
5
replies
5.6k
views
Bwa Sampe Very Large Insert Size
bwa
updated 12.7 years ago by ▴ 920 • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
5.6k
views
Comment: C: Snp Filtering After Being Called.
12.7 years ago by Bioscientist ★ 1.7k
1
vote
1
reply
6.1k
views
Dbsnp In Bed Format
dbsnp snp
updated 12.7 years ago by ★ 2.4k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
9.8k
views
Comment: C: How To Filter Against Common Snp Database To Look For Rare Variants?
12.7 years ago by Bioscientist ★ 1.7k
10
votes
2
replies
3.5k
views
Is Dindel Still Preferred Over Gatk For Indel Calling?
snp gatk
updated 12.7 years ago by 16k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
7.1k
views
Comment: C: Using Gatk If I Have No Read Group Information
12.7 years ago by Bioscientist ★ 1.7k
0
votes
1
reply
7.1k
views
Comment: C: Using Gatk If I Have No Read Group Information
12.7 years ago by Bioscientist ★ 1.7k
7
votes
6
replies
7.1k
views
Using Gatk If I Have No Read Group Information
gatk
updated 12.7 years ago by ★ 2.5k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
3.2k
views
Comment: C: Locate Part Of Region Of Interest In Synteny Map
12.7 years ago by Bioscientist ★ 1.7k
6
votes
4
replies
3.2k
views
Locate Part Of Region Of Interest In Synteny Map
updated 12.7 years ago by 12k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
3.2k
views
Comment: C: Locate Part Of Region Of Interest In Synteny Map
12.7 years ago by Bioscientist ★ 1.7k
0
votes
0
replies
3.9k
views
Comment: C: Softwares For Simple Statistics Of Bed Files
12.7 years ago by Bioscientist ★ 1.7k
13
votes
4
replies
3.9k
views
Softwares For Simple Statistics Of Bed Files
bed r bioconductor statistics
updated 12.7 years ago by 36k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
3.3k
views
Comment: C: General Question: Human Cnv/Structural Variants Algorithms Using Next-Gen Data C
12.7 years ago by Bioscientist ★ 1.7k
0
votes
0
replies
3.3k
views
Comment: C: Bwa Gapped Alignment
12.7 years ago by Bioscientist ★ 1.7k
3
votes
2
replies
3.3k
views
Bwa Gapped Alignment
bwa
updated 12.7 years ago by 4.1k • written 12.7 years ago by ★ 1.7k
1
vote
0
replies
12k
views
Comment: C: Soft-Clipped Vs Unmapped?
12.7 years ago by Bioscientist ★ 1.7k
8
votes
2
replies
6.3k
views
Connect Eqtl And Gwas Study
eqtl gwas database
updated 12.7 years ago by 16k • written 12.7 years ago by ★ 1.7k
3
votes
2
replies
3.9k
views
Look For Dnase I Hypersensitivity Sites Database
encode
updated 12.7 years ago by 27k • written 12.7 years ago by ★ 1.7k
0
votes
0
replies
3.9k
views
Comment: C: Look For Dnase I Hypersensitivity Sites Database
12.7 years ago by Bioscientist ★ 1.7k
1
vote
0
replies
7.0k
views
Answer: A: Structural Variations (Sv) Annotation Workflow
12.7 years ago by Bioscientist ★ 1.7k
3
votes
2
replies
3.3k
views
General Question: Human Cnv/Structural Variants Algorithms Using Next-Gen Data Cannot Reach Consensus
cnv structural next-gen sequencing
updated 12.7 years ago by ▴ 30 • written 12.7 years ago by ★ 1.7k
3
votes
4
replies
2.1k
views
To Group Items In Bed Files
bedtools merge
updated 12.9 years ago by 20k • written 12.9 years ago by ★ 1.7k
0
votes
0
replies
83k
views
Comment: C: Bedtools Compare Multiple Bed Files?
12.9 years ago by Bioscientist ★ 1.7k
12
votes
7
replies
12k
views
Download The List Of All Ensembl Genes And Difference Between Refseq And Ensembl Genes
ensembl biomart ucsc
updated 12.9 years ago by ★ 1.2k • written 12.9 years ago by ★ 1.7k
0
votes
0
replies
12k
views
Comment: C: Download The List Of All Ensembl Genes And Difference Between Refseq And Ensembl
12.9 years ago by Bioscientist ★ 1.7k
0
votes
0
replies
12k
views
Comment: C: Download The List Of All Ensembl Genes And Difference Between Refseq And Ensembl
12.9 years ago by Bioscientist ★ 1.7k
131 results • Page 1 of 3
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