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Comment: C: What is the appropriate assembler for PacBio long reads
6.4 years ago by bioinforesearchquestions ▴ 370
7
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7
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5.6k
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What is the appropriate assembler for PacBio long reads
Assembly alignment
updated 6.4 years ago by ▴ 410 • written 6.4 years ago by ▴ 370
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2
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2.2k
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Are there any tools for comparing structural variants between different callers?
Structural variants SV
6.5 years ago by bioinforesearchquestions ▴ 370
5
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2
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1.4k
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How to align the sanger sequenced fragments against human reference gene?
DNAseq sanger align alignment
updated 6.5 years ago by 47k • written 6.5 years ago by ▴ 370
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2
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1.8k
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While generating the % of mapped reads to all miRNAs, do I need to consider unique or multi-match reads?
miRNA mirdeep2 RNAseq
6.7 years ago by bioinforesearchquestions ▴ 370
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2
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1.9k
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Need help in selecting the correct output file from miRDeep2?
miRNA miRDeep2 miRBase RNA-Seq
6.7 years ago by bioinforesearchquestions ▴ 370
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1.9k
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Comment: C: Need help in selecting the correct output file from miRDeep2?
6.7 years ago by bioinforesearchquestions ▴ 370
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0
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3.7k
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Comment: C: How to anntate small-RNA seq reads distribution
6.7 years ago by bioinforesearchquestions ▴ 370
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1
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2.4k
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how to annotate (rRNA, tRNA, Mt_rRNA, Mt_tRNA, etc) sequenced small RNA reads
rna-seq small RNA annotation
6.7 years ago by bioinforesearchquestions ▴ 370
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Comment: C: What are the methods to downsample the Depth of coverage (ex: 50X -> 25X)?
6.7 years ago by bioinforesearchquestions ▴ 370
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2
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2.1k
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What are the methods to downsample the Depth of coverage (ex: 50X -> 25X)?
BAM downsample depth wig
6.7 years ago by bioinforesearchquestions ▴ 370
5
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5
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5.8k
views
How to visualize large VCF files
VCF variant calling SNPS SNP variant
updated 6.7 years ago by 20 • written 8.6 years ago by ▴ 370
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0
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3.6k
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Comment: C: How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
6.8 years ago by bioinforesearchquestions ▴ 370
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0
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1.7k
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Comment: C: Need tools recommendation for plant RNAseq data
6.8 years ago by bioinforesearchquestions ▴ 370
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3
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1.7k
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Need tools recommendation for plant RNAseq data
RNA-Seq plants Assembly variant calling
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by ▴ 370
2
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1
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1.2k
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Is it possible to check whether a sample is progeny of the other two samples from exome sequenced data?
SNP exome NGS DNA-SEQ
updated 6.9 years ago by ▴ 600 • written 6.9 years ago by ▴ 370
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1
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4.8k
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Comment: C: How to validate the SNP calling pipeline?
6.9 years ago by bioinforesearchquestions ▴ 370
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0
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4.8k
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Comment: C: How to validate the SNP calling pipeline?
6.9 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.8k
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Comment: C: How to validate the SNP calling pipeline?
6.9 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.8k
views
Comment: C: How to validate the SNP calling pipeline?
6.9 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.8k
views
Comment: C: How to validate the SNP calling pipeline?
6.9 years ago by bioinforesearchquestions ▴ 370
10
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14
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4.8k
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6 follow
How to validate the SNP calling pipeline?
DNASeq variant calling SNP
updated 6.9 years ago by 88k • written 6.9 years ago by ▴ 370
1
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13
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2.9k
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How to generate FASTA sequence of genes and phylogenetic analysis from NGS sequenced reads?
DNAseq FASTA Phylogenetic analysis NGS
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 370
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1
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2.9k
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Comment: C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.9k
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Comment: C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.9k
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Comment: C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.3k
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Comment: C: Do I need to provide the Illumina's target region bed file for qualimap?
6.9 years ago by bioinforesearchquestions ▴ 370
2
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5
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4.3k
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Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq coverage depth exome sequencing WES
updated 7.0 years ago by ★ 1.4k • written 7.2 years ago by ▴ 370
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1
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2.9k
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Comment: C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
7.0 years ago by bioinforesearchquestions ▴ 370
0
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0
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3.6k
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Comment: C: identification of viral gene from fastq or BAM file
7.0 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.9k
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Comment: C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
7.0 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
2.9k
views
Comment: C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
7.0 years ago by bioinforesearchquestions ▴ 370
2
votes
1
reply
3.8k
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Which read counts file from miRDeep2 should be considered for differential expression analysis?
miRNA miRDeep2 miRBase RNA-Seq
updated 7.0 years ago by 35k • written 7.1 years ago by ▴ 370
4
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7
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2.3k
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What kind of filtering can be applied to reduce my exonic variants?
Exomeseq SNP DNAseq Trio Variants
updated 7.0 years ago by 20 • written 7.7 years ago by ▴ 370
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0
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1.8k
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Looking for WIG base coverage file for hg19 to call CNVs in Exome data using EXCAVATOR
CNV Exome EXCAVATOR WIG hg19
7.1 years ago by bioinforesearchquestions ▴ 370
0
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0
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3.2k
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Comment: C: uniqueome mappability file for EXCAVATOR-tool
7.1 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.7k
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Comment: C: Looking for wig base coverage file for hg19
7.1 years ago by bioinforesearchquestions ▴ 370
0
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0
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2.1k
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Comment: C: Can I merge the exome interval lists from two different kits for identifying CNV
7.1 years ago by bioinforesearchquestions ▴ 370
1
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2
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2.1k
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Can I merge the exome interval lists from two different kits for identifying CNVs using XHMM?
CNVs BED Exome XHMM Intervals
updated 7.1 years ago by 27k • written 7.1 years ago by ▴ 370
0
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0
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4.4k
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Answer: A: Read Counts from miRDeep2 for posterior DE analysis
7.1 years ago by bioinforesearchquestions ▴ 370
1
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0
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3.0k
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Comment: C: Help required for Bacterial RNAseq data
7.2 years ago by bioinforesearchquestions ▴ 370
0
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2
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3.3k
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Comment: C: How come the QC-passed reads from samtools flagstat is different from FASTQ (R1+
7.2 years ago by bioinforesearchquestions ▴ 370
8
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6
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3.3k
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How come the QC-passed reads from samtools flagstat is different from FASTQ (R1+R2) read count?
samtools sam bam alignment
updated 7.2 years ago by 5.9k • written 7.2 years ago by ▴ 370
0
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0
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3.2k
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Comment: C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by bioinforesearchquestions ▴ 370
0
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1
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3.2k
views
Comment: C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by bioinforesearchquestions ▴ 370
0
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2
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3.2k
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Comment: C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by bioinforesearchquestions ▴ 370
0
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0
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3.2k
views
Comment: C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by bioinforesearchquestions ▴ 370
1
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0
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3.2k
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Comment: C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by bioinforesearchquestions ▴ 370
0
votes
2
replies
3.2k
views
Comment: C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by bioinforesearchquestions ▴ 370
6
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13
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3.2k
views
What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) from cuffdiff output?
RNA-SEQ heatmap cuffdiff
updated 7.2 years ago by ★ 2.2k • written 7.2 years ago by ▴ 370
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