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Comment: C: Why can't use t-test for differential expression (negative binomial distribution
5.7 years ago by CY ▴ 750
2
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12
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2.5k
views
Multiple testing correction issue
multiple testing correction
updated 5.7 years ago by 14k • written 5.7 years ago by ▴ 750
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2
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2.5k
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Comment: C: Multiple testing correction issue
5.7 years ago by CY ▴ 750
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0
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2.5k
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Comment: C: Multiple testing correction issue
5.7 years ago by CY ▴ 750
0
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2
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2.5k
views
Comment: C: Multiple testing correction issue
5.7 years ago by CY ▴ 750
0
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1
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2.5k
views
Comment: C: Multiple testing correction issue
5.7 years ago by CY ▴ 750
0
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1
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1.3k
views
Tools that make mutation based phylogenetic tree figure
phylogenetic heterogeneity
5.7 years ago by CY ▴ 750
0
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0
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903
views
intuitive explaination of using HMM for alignment
HMM alignment
5.7 years ago by CY ▴ 750
1
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1
reply
1.4k
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Capturing TCR from cfDNA
TCR cfDNA ctDNA
5.8 years ago by CY ▴ 750
0
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0
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1.7k
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TCR-Seq from bulk RNA-Seq data using TRUST
TCR-Seq RNA-Seq TRUST
5.8 years ago by CY ▴ 750
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0
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1.2k
views
Does it make sense to use methylation data for GESA
GESA methylation expression
5.8 years ago by CY ▴ 750
0
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1
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2.0k
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Comment: C: Can we get absolute abundance of TCR using TCR-Seq?
5.8 years ago by CY ▴ 750
0
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1
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2.0k
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Comment: C: Can we get absolute abundance of TCR using TCR-Seq?
5.8 years ago by CY ▴ 750
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0
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843
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Question regarding deFuse and fusion calling
RNA-Seq fusion deFuse
5.8 years ago by CY ▴ 750
0
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0
replies
1.2k
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Why can't solve tumor clonality using simple EM (Gaussian mixture) instead of MCMC(PyClone) or variational Bayes (SciClone)?
Clonality PyClone SciClone
6.0 years ago by CY ▴ 750
0
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0
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2.7k
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Comment: C: Is linearity maintained in linear regression of RNA-Seq?
6.0 years ago by CY ▴ 750
0
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1
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2.7k
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Comment: C: Is linearity maintained in linear regression of RNA-Seq?
6.0 years ago by CY ▴ 750
4
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5
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2.7k
views
Is linearity maintained in linear regression of RNA-Seq?
RNA-Seq
updated 17 months ago by 88k • written 6.0 years ago by ▴ 750
0
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1
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22k
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Comment: C: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
6.0 years ago by CY ▴ 750
0
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0
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7.3k
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Comment: C: Log-transformed RNA-Seq data and linear regression
6.0 years ago by CY ▴ 750
0
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0
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7.3k
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Comment: C: Log-transformed RNA-Seq data and linear regression
6.0 years ago by CY ▴ 750
0
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0
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1.1k
views
Any method to solve RNA-Seq's non-linearity problem for deconvoluting immune cell?
RNA-Seq deconvolution
6.0 years ago by CY ▴ 750
3
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2
replies
2.1k
views
Somatic variant caller
next-gen variant calling somatic
updated 6.0 years ago by 20 • written 7.8 years ago by ▴ 750
3
votes
6
replies
1.2k
views
Transcriptomic profile fluctuation between different time point
RNA-Seq
updated 6.1 years ago by 20 • written 6.1 years ago by ▴ 750
0
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2
replies
4.1k
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Comment: C: Why use LASSO / elastic net in survival regression?
6.1 years ago by CY ▴ 750
2
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6
replies
4.1k
views
Why use LASSO / elastic net in survival regression?
survival analysis LASSO
updated 6.1 years ago by 27k • written 6.1 years ago by ▴ 750
0
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0
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1.2k
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Any tools for co-mutation analysis just like WGCNA on co-expression analysis
Mutation Expression
6.1 years ago by CY ▴ 750
0
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0
replies
635
views
Forum: Have TCGA yielded expected research value yet?
TCGA
updated 19 months ago by 44k • written 6.1 years ago by ▴ 750
50
votes
9
replies
19k
views
7 follow
why PCA for RNA-Seq but tSNE for scRNA-seq?
pca RNA-Seq tSNE scRNA-seq
updated 6.1 years ago by ▴ 160 • written 6.6 years ago by ▴ 750
0
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1
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1.0k
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Comment: C: Can remote, but same type, tissue be used as RNA-Seq normal control for tumor st
6.1 years ago by CY ▴ 750
0
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3
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1.0k
views
Can remote, but same type, tissue be used as RNA-Seq normal control for tumor study?
RNA-Seq
updated 6.1 years ago by ★ 4.1k • written 6.1 years ago by ▴ 750
0
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1
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4.8k
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Comment: C: Why NMF for mutation signature analysis
6.1 years ago by CY ▴ 750
13
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8
replies
4.8k
views
Why NMF for mutation signature analysis
mutation NMF signature
6.1 years ago by CY ▴ 750
0
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1
reply
4.8k
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Comment: C: Why NMF for mutation signature analysis
6.1 years ago by CY ▴ 750
0
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0
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4.8k
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Comment: C: Why NMF for mutation signature analysis
6.1 years ago by CY ▴ 750
0
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0
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1.2k
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Comment: C: Transcriptomic profile fluctuation between different time point
6.1 years ago by CY ▴ 750
1
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0
replies
1.2k
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Comment: C: Transcriptomic profile fluctuation between different time point
6.1 years ago by CY ▴ 750
0
votes
1
reply
1.2k
views
Comment: C: Transcriptomic profile fluctuation between different time point
6.1 years ago by CY ▴ 750
0
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1
reply
1.3k
views
Comment: C: Gene expression distribution (non-DE and DE)
6.2 years ago by CY ▴ 750
0
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1
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1.3k
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Comment: C: Gene expression distribution (non-DE and DE)
6.2 years ago by CY ▴ 750
2
votes
5
replies
1.3k
views
Gene expression distribution (non-DE and DE)
RNA-Seq differential expression
updated 6.2 years ago by 88k • written 6.2 years ago by ▴ 750
1
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0
replies
4.4k
views
Shannon index vs Simpson index in evaluating TCR diversity
TCR-Seq TCR diversity
6.2 years ago by CY ▴ 750
0
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0
replies
4.6k
views
Answer: A: Correcting for tumor purity in tumor evolution analysis
6.2 years ago by CY ▴ 750
0
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1
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1.6k
views
Comment: C: Low VAF (around 7%) mutated gene prevalent in cancer patient (3/4), driver?
6.2 years ago by CY ▴ 750
0
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1
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1.6k
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Comment: C: Low VAF (around 7%) mutated gene prevalent in cancer patient (3/4), driver?
6.2 years ago by CY ▴ 750
3
votes
5
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1.6k
views
Low VAF (around 7%) mutated gene prevalent in cancer patient (3/4), driver?
mutation VAF driver gene
6.2 years ago by CY ▴ 750
0
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0
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7.1k
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Comment: C: What kind of distribution to you expect to see for RNA-Seq expression levels?
6.2 years ago by CY ▴ 750
0
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0
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1.6k
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Comment: C: Would different enrichment tools result differently by defining pathway differen
6.2 years ago by CY ▴ 750
4
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4
replies
1.6k
views
Would different enrichment tools result differently by defining pathway differently
RNA-Seq enrichment analysis
6.2 years ago by CY ▴ 750
0
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1
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1.6k
views
Comment: C: Difference between gene set enrichment and pathway enrichment
6.2 years ago by CY ▴ 750
278 results • Page 3 of 6
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