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2
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3
replies
1.8k
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Any tools to estimate the relative abundance of immune cell in tumor
RNA-Seq immune fraction absolute estimate
updated 6.2 years ago by 88k • written 6.2 years ago by ▴ 750
0
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0
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1.8k
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Comment: C: Any tools to estimate the relative abundance of immune cell in tumor
6.2 years ago by CY ▴ 750
1
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0
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1.0k
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Can any tool distinguishs immune inflammation / immune excluded phenotype?
RNA-Seq TCR-Seq ESTIMATE
6.2 years ago by CY ▴ 750
3
votes
1
reply
3.0k
views
Driver mutation vs biomarker vs recurrent mutation
Driver mutation biomarker mutation VAF
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 750
0
votes
1
reply
1.2k
views
Why not simple Gaussian model instead of Gaussian mixture for VQSR?
VQSR GATK
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 750
0
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1
reply
13k
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Comment: C: Interesting bioinformatics blogs (2017 edition)
6.5 years ago by CY ▴ 750
0
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0
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5.4k
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Comment: C: Your Favorite Bioinformatics Blogs (October 2011)
6.5 years ago by CY ▴ 750
1
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0
replies
24k
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Answer: A: Your Favorite Bioinformatics Blogs (March 2010)
6.5 years ago by CY ▴ 750
0
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0
replies
10k
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Answer: A: Your Favorite Bioinformatics Blog(S) (2013 Edition)
6.5 years ago by CY ▴ 750
0
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0
replies
1.4k
views
Comment: C: Why VarScan always get more somatic variants than other caller
6.5 years ago by CY ▴ 750
0
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1
reply
1.4k
views
Comment: C: Why VarScan always get more somatic variants than other caller
6.5 years ago by CY ▴ 750
0
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1
reply
1.4k
views
Comment: C: Why VarScan always get more somatic variants than other caller
6.5 years ago by CY ▴ 750
0
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6
replies
1.4k
views
Why VarScan always get more somatic variants than other caller
Variant VarScan
6.5 years ago by CY ▴ 750
0
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1
reply
4.2k
views
Comment: C: Immunotherapy tools for predicting binding affinity between TCR and epitode
6.5 years ago by CY ▴ 750
1
vote
1
reply
1.3k
views
R plot.DNAcopy with x-axis showing chromosome instead of chromosome coordinate
RNA-Seq CNV DNAcopy
6.5 years ago by CY ▴ 750
0
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1
reply
2.1k
views
Comment: C: SciClone: Why cluster in non-CN neutral region considering it infers only on CN
6.6 years ago by CY ▴ 750
2
votes
4
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2.1k
views
SciClone: Why cluster in non-CN neutral region considering it infers only on CN neutral region
SciClone clonality
6.6 years ago by CY ▴ 750
0
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0
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2.3k
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Comment: C: SciClone: Which Variant to Which Clone
6.6 years ago by CY ▴ 750
0
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0
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4.3k
views
Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.6 years ago by CY ▴ 750
4
votes
7
replies
4.3k
views
STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
RNA-Seq STAR RSEM HT-Seq gene expression
6.6 years ago by CY ▴ 750
1
vote
1
reply
4.3k
views
Answer: A: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.6 years ago by CY ▴ 750
0
votes
1
reply
4.3k
views
Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.6 years ago by CY ▴ 750
0
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1
reply
3.6k
views
Comment: C: SciClone not numeric error
6.6 years ago by CY ▴ 750
0
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1
reply
19k
views
Comment: C: why PCA for RNA-Seq but tSNE for scRNA-seq?
6.6 years ago by CY ▴ 750
0
votes
0
replies
1.2k
views
Log-odds based filtering and pairHMM alignment during local realignment
GATK mutect Bayes
updated 6.6 years ago by 20 • written 6.8 years ago by ▴ 750
0
votes
0
replies
2.1k
views
Comment: C: Inconsistency of allele depth in BAM and VCF
6.6 years ago by CY ▴ 750
3
votes
3
replies
2.1k
views
Inconsistency of allele depth in BAM and VCF
allele depth bam vcf variant
updated 6.6 years ago by ▴ 600 • written 6.6 years ago by ▴ 750
1
vote
1
reply
2.0k
views
CBS in CNV calling
cnv cbs
updated 6.7 years ago by 88k • written 6.7 years ago by ▴ 750
0
votes
0
replies
935
views
RNA-Seq: Expression consistency across time point
RNA-Seq expression
6.7 years ago by CY ▴ 750
0
votes
0
replies
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
6.7 years ago by CY ▴ 750
0
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1
reply
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
6.7 years ago by CY ▴ 750
2
votes
3
replies
1.0k
views
Prior probability during SNP calling
SNP
6.7 years ago by CY ▴ 750
0
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1
reply
2.4k
views
Comment: C: call somatic CNV from cfDNA with normal control
6.7 years ago by CY ▴ 750
0
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1
reply
1.9k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.8 years ago by CY ▴ 750
0
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1
reply
1.9k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.8 years ago by CY ▴ 750
0
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1
reply
1.9k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.8 years ago by CY ▴ 750
4
votes
2
replies
2.6k
views
How 2-channel sequencing chemistry (Next-Seq) distinguish "G" and 'no signal'
Next-Seq QC
updated 6.8 years ago by 105k • written 6.8 years ago by ▴ 750
2
votes
7
replies
1.9k
views
During GO / pathway enrichment analysis, should we exclude genes not expressed in both groups?
RNA-Seq enrichment analysis DE analysis
6.8 years ago by CY ▴ 750
0
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1
reply
1.3k
views
Comment: C: one sample from pool shows low quality at the end, why?
6.8 years ago by CY ▴ 750
0
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0
replies
1.3k
views
Comment: C: one sample from pool shows low quality at the end, why?
6.8 years ago by CY ▴ 750
0
votes
0
replies
1.3k
views
Comment: C: one sample from pool shows low quality at the end, why?
6.8 years ago by CY ▴ 750
1
vote
6
replies
1.3k
views
one sample from pool shows low quality at the end, why?
fastqc
6.8 years ago by CY ▴ 750
0
votes
1
reply
2.4k
views
Comment: C: call somatic CNV from cfDNA with normal control
6.8 years ago by CY ▴ 750
2
votes
6
replies
2.4k
views
call somatic CNV from cfDNA with normal control
cnv somatic cfDNA
6.8 years ago by CY ▴ 750
0
votes
1
reply
2.6k
views
Comment: C: WGS coverage (depth) for CNV detection
6.8 years ago by CY ▴ 750
2
votes
4
replies
2.6k
views
WGS coverage (depth) for CNV detection
WGS CNV
updated 6.8 years ago by ★ 2.8k • written 6.8 years ago by ▴ 750
0
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0
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1.9k
views
Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
6.8 years ago by CY ▴ 750
0
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1
reply
1.9k
views
Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
6.8 years ago by CY ▴ 750
0
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6
replies
1.9k
views
How representative the solid tumor sample is to that entire tumor lesion in terms of somatic mutation profile
tumor somatic mutation
6.8 years ago by CY ▴ 750
0
votes
0
replies
4.1k
views
Answer: A: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
6.8 years ago by CY ▴ 750
278 results • Page 4 of 6
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