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Comment: Comment: how to select peaks at not transcribed genes
3.6 years ago by Lila M ★ 1.3k
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1.7k
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Comment: Comment: how to select peaks at not transcribed genes
3.6 years ago by Lila M ★ 1.3k
0
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0
replies
1.7k
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Comment: Comment: how to select peaks at not transcribed genes
3.6 years ago by Lila M ★ 1.3k
0
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1
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1.7k
views
Comment: Comment: how to select peaks at not transcribed genes
3.6 years ago by Lila M ★ 1.3k
1
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8
replies
1.7k
views
how to select peaks at not transcribed genes
bedtools transcribed peaks not_trasncribed
updated 3.6 years ago by 85k • written 3.6 years ago by ★ 1.3k
0
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0
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1.5k
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Comment: Comment: No annotation peaks when running homer
3.6 years ago by Lila M ★ 1.3k
0
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2
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1.5k
views
No annotation peaks when running homer
homer peaks tss
3.6 years ago by Lila M ★ 1.3k
0
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1
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1.2k
views
Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?
RNAseq cancer
updated 20 months ago by 44k • written 3.7 years ago by ★ 1.3k
1
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0
replies
603
views
What is the best approach to correlate expression levels, mutated genes and clinical variables
RNA-Seq correlation mutation
3.7 years ago by Lila M ★ 1.3k
0
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0
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668
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Comment: C: best way to analyze a subset of DE genes
3.7 years ago by Lila M ★ 1.3k
0
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1
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668
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Comment: C: best way to analyze a subset of DE genes
3.7 years ago by Lila M ★ 1.3k
0
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4
replies
668
views
best way to analyze a subset of DE genes
RNA-Seq DESeq expression gene
3.7 years ago by Lila M ★ 1.3k
1
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1
reply
2.9k
views
Comment: C: LEfSe for multiple samples
3.7 years ago by Lila M ★ 1.3k
1
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1
reply
2.9k
views
Comment: C: LEfSe for multiple samples
3.7 years ago by Lila M ★ 1.3k
4
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2
replies
6.0k
views
problems installing HTSeq
RNA-Seq HTSeq DEXSeq
updated 3.8 years ago by 20 • written 7.6 years ago by ★ 1.3k
0
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0
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1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
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0
replies
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
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1
reply
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
votes
1
reply
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
votes
0
replies
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
votes
1
reply
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
1
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18
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1.6k
views
problem when create an expression matrix using a table
RNA-Seq software error R expression
updated 3.8 years ago by 13k • written 3.8 years ago by ★ 1.3k
0
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1
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1.6k
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Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
votes
1
reply
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
votes
1
reply
1.6k
views
Comment: C: problem when create an expression matrix using a table
3.8 years ago by Lila M ★ 1.3k
0
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0
replies
1.0k
views
Comment: C: How to do a DESq analysis using a table with raw counts or normalized counts
3.8 years ago by Lila M ★ 1.3k
4
votes
2
replies
1.0k
views
How to do a DESq analysis using a table with raw counts or normalized counts
R RNA-Seq DESeq expersion
updated 3.8 years ago by 13k • written 3.8 years ago by ★ 1.3k
0
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0
replies
777
views
Comment: C: statitistical question: how can I say if there is a difference in the gene that
4.0 years ago by Lila M ★ 1.3k
0
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2
replies
777
views
statitistical question: how can I say if there is a difference in the gene that fall inside/outside an especific region?
correlation interdependence gene distance
4.0 years ago by Lila M ★ 1.3k
0
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0
replies
1.1k
views
Comment: C: how to calculate distance from a single nucleotide position to a peak
4.0 years ago by Lila M ★ 1.3k
3
votes
2
replies
1.1k
views
how to calculate distance from a single nucleotide position to a peak
ChIP-Seq peak distance genome
updated 4.0 years ago by 35k • written 4.0 years ago by ★ 1.3k
4
votes
5
replies
1.9k
views
How to compare expression in gene list
expresion statistic R
updated 4.1 years ago by 20 • written 7.7 years ago by ★ 1.3k
15
votes
15
replies
6.8k
views
error while reading bigwig files in computeMatrix (deeptools)
deeptools computeMatrix bigwig coverage
updated 3.6 years ago by • 0 • written 5.8 years ago by ★ 1.3k
6
votes
8
replies
5.0k
views
How to smooth (ggplot2) 3 samples in the same plot
R ggplot2 smooth plot ChIP-Seq
updated 4.8 years ago by 20 • written 7.9 years ago by ★ 1.3k
0
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1
reply
3.5k
views
Comment: C: how to compare 2 fasta sequences with perl
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 1.3k
0
votes
0
replies
1.2k
views
How to identify confunders covariates in metagenomic analysis
metagenomic confunding multivariate Maaslin
5.1 years ago by Lila M ★ 1.3k
0
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0
replies
1.4k
views
Comment: C: re sampling for unbalanced samples
5.1 years ago by Lila M ★ 1.3k
0
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1
reply
1.4k
views
Comment: A: re sampling for unbalanced samples
5.1 years ago by Lila M ★ 1.3k
0
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7
replies
1.4k
views
re sampling for unbalanced samples
resamplig unbalanced samples
5.1 years ago by Lila M ★ 1.3k
0
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1
reply
1.4k
views
Comment: A: re sampling for unbalanced samples
5.1 years ago by Lila M ★ 1.3k
0
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0
replies
1.4k
views
best way to do a boxplot for abundnace matrix (microbiome data)
abundance microbiome boxplot ZIBR
5.3 years ago by Lila M ★ 1.3k
0
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1
reply
1.0k
views
Comment: C: How to analyze aCGH data in R?
5.3 years ago by Lila M ★ 1.3k
0
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3
replies
1.0k
views
How to analyze aCGH data in R?
aCGH microarray
5.3 years ago by Lila M ★ 1.3k
0
votes
1
reply
900
views
How to sumarize longotudinal data by patients and plot it?
longitudinal data summary plot
5.3 years ago by Lila M ★ 1.3k
0
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0
replies
798
views
how to Dirichlet-multinomial mixture model over Bracken ssp abundance?
Bracken metagenomics microbiome Dirichlet model
5.3 years ago by Lila M ★ 1.3k
0
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1
reply
1.6k
views
Comment: C: how to plot an abundance table with ssp from metagenominc data
5.3 years ago by Lila M ★ 1.3k
0
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3
replies
1.6k
views
how to plot an abundance table with ssp from metagenominc data
OTUs metagenomic microbiome
updated 5.3 years ago by 3.2k • written 5.3 years ago by ★ 1.3k
0
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1
reply
17k
views
Comment: C: How to do FPKM differential analysis?
5.4 years ago by Lila M ★ 1.3k
2
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1
reply
17k
views
Answer: C: How to do FPKM differential analysis?
5.4 years ago by Lila M ★ 1.3k
1
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1
reply
1.9k
views
Comment: C: Differential network analysis for two treatments
5.4 years ago by Lila M ★ 1.3k
448 results • Page 3 of 9
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