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4.1k
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Answer: A: Annotate .bed file with gene names and exon
5.4 years ago by Lila M ★ 1.3k
1
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0
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2.2k
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Comment: C: Column that include Enterez ID converted from wheat Ensemble ID using biomart pa
5.4 years ago by Lila M ★ 1.3k
0
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1
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2.2k
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Comment: C: Column that include Enterez ID converted from wheat Ensemble ID using biomart pa
5.4 years ago by Lila M ★ 1.3k
3
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0
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9.3k
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Comment: C: RNA-Seq: Getting Started with Kallisto
5.4 years ago by Lila M ★ 1.3k
2
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0
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5.0k
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Comment: C: How to use htseq-count with several samples ?
5.4 years ago by Lila M ★ 1.3k
0
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1
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911
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Comment: C: where to download methylation data for colorectal cancer?
5.4 years ago by Lila M ★ 1.3k
2
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3
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911
views
where to download methylation data for colorectal cancer?
methylation colorectal public data data
updated 5.4 years ago by ★ 18k • written 5.4 years ago by ★ 1.3k
1
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2
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2.2k
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Comment: C: Column that include Enterez ID converted from wheat Ensemble ID using biomart pa
5.4 years ago by Lila M ★ 1.3k
17
votes
18
replies
3.3k
views
How to deal with data set harmonization in R
R coalesce harmonization data cleaning
updated 5.4 years ago by 9.0k • written 5.4 years ago by ★ 1.3k
0
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1
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3.3k
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Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
0
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1
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3.3k
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Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
0
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0
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3.3k
views
Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
0
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1
reply
3.3k
views
Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
0
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3
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3.3k
views
Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
0
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1
reply
3.3k
views
Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
1
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1
reply
3.3k
views
Comment: C: How to deal with data set harmonization in R
5.4 years ago by Lila M ★ 1.3k
5
votes
4
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1.4k
views
what is the best way to calculate significant differences in tss profiles?
coverage differences tss
updated 5.5 years ago by 20 • written 5.7 years ago by ★ 1.3k
0
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1
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1.2k
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Comment: C: probles with loess normalization in affy
5.5 years ago by Lila M ★ 1.3k
3
votes
3
replies
1.2k
views
probles with loess normalization in affy
affy microarray loess normalization
5.5 years ago by Lila M ★ 1.3k
2
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1
reply
1.2k
views
How to analyze a ratio data set at different replication time point.
reliscan ratio repliseq
updated 5.5 years ago by 20 • written 6.4 years ago by ★ 1.3k
1
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0
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4.1k
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Comment: C: how to solve this problem in bedtools genomecov?
5.6 years ago by Lila M ★ 1.3k
1
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1
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4.1k
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Comment: C: how to solve this problem in bedtools genomecov?
5.6 years ago by Lila M ★ 1.3k
1
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1
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4.1k
views
Comment: C: how to solve this problem in bedtools genomecov?
5.6 years ago by Lila M ★ 1.3k
12
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7
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4.1k
views
how to solve this problem in bedtools genomecov?
bedtools genomecov mouse
updated 5.6 years ago by 85k • written 5.6 years ago by ★ 1.3k
0
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0
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1.1k
views
How can I get the ID reference genes in GEO ?
ID reference GEO gene ID
5.6 years ago by Lila M ★ 1.3k
2
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2
replies
2.0k
views
error in prepare annotation script DEXseq
DEXseq RNAseq Ensamble gencode DEU
updated 5.6 years ago by • 0 • written 5.8 years ago by ★ 1.3k
0
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0
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1.4k
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Comment: C: what is the best way to calculate significant differences in tss profiles?
5.7 years ago by Lila M ★ 1.3k
2
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0
replies
2.6k
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Comment: C: How to calculate read depth for a specific gene list?
5.8 years ago by Lila M ★ 1.3k
0
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1
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2.6k
views
Comment: C: How to calculate read depth for a specific gene list?
5.8 years ago by Lila M ★ 1.3k
6
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4
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2.6k
views
How to calculate read depth for a specific gene list?
coverage readdepth interesct
5.8 years ago by Lila M ★ 1.3k
0
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0
replies
1.5k
views
Comment: C: how to plot a TSS profile using an external quantification for Watson and Crick
5.8 years ago by Lila M ★ 1.3k
0
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0
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1.5k
views
Comment: C: how to plot a TSS profile using an external quantification for Watson and Crick
5.8 years ago by Lila M ★ 1.3k
2
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3
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1.5k
views
how to plot a TSS profile using an external quantification for Watson and Crick strand
ggplot TSS coverage ratio
5.8 years ago by Lila M ★ 1.3k
3
votes
1
reply
6.8k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.8 years ago by Lila M ★ 1.3k
1
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1
reply
6.8k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.8 years ago by Lila M ★ 1.3k
0
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1
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6.8k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.8 years ago by Lila M ★ 1.3k
0
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0
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6.8k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.8 years ago by Lila M ★ 1.3k
1
vote
1
reply
6.8k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.8 years ago by Lila M ★ 1.3k
0
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1
reply
6.8k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.8 years ago by Lila M ★ 1.3k
0
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0
replies
1.1k
views
How to deal with wig files separate bu watson and crick strand
wig GROseq TSSprofile deepTools
5.9 years ago by Lila M ★ 1.3k
1
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1
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3.2k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.9 years ago by Lila M ★ 1.3k
0
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2
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3.2k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.9 years ago by Lila M ★ 1.3k
1
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1
reply
3.2k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.9 years ago by Lila M ★ 1.3k
0
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0
replies
3.2k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.9 years ago by Lila M ★ 1.3k
16
votes
13
replies
3.2k
views
how to get correlation between the counts over each gene at the same timepoint (two replicates)
RNA-Seq HTSeq replication correlation
updated 5.9 years ago by 11k • written 5.9 years ago by ★ 1.3k
1
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1
reply
3.2k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.9 years ago by Lila M ★ 1.3k
0
votes
0
replies
1.4k
views
Comment: C: how can I get the coverage over introns only in a RNA-seq experiment?
6.0 years ago by Lila M ★ 1.3k
2
votes
3
replies
1.4k
views
how can I get the coverage over introns only in a RNA-seq experiment?
RNA-Seq coverage introns
6.0 years ago by Lila M ★ 1.3k
48
votes
14
replies
23k
views
8 follow
should I merge fastq files for different lanes before do QC?
RNA-Seq merge QC
updated 6.1 years ago by ▴ 70 • written 7.2 years ago by ★ 1.3k
9
votes
9
replies
3.6k
views
Problems running variant calling (VC) GATK: SAM/BAM/CRAM file dedup.bam is malformed
GATK VC RNA-Seq
6.2 years ago by Lila M ★ 1.3k
448 results • Page 4 of 9
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