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0
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0
replies
338
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Prediction of altrered metabolites from altered gene expression
Gene Metabolites
17 months ago by english.server ▴ 300
0
votes
0
replies
840
views
Comment: Comment: Order of Normalization/Surrogate variable analysis(or even known batch correctio
2.3 years ago by english.server ▴ 300
1
vote
2
replies
840
views
Order of Normalization/Surrogate variable analysis(or even known batch correction)/QC
QC Batch-effect Normalization
updated 4 months ago by 44k • written 2.3 years ago by ▴ 300
0
votes
0
replies
382
views
How to calculate/visualize network robustness/vulnerability?
Erdos-Renyi Barabasi-Albert igraph
2.5 years ago by english.server ▴ 300
4
votes
1
reply
587
views
Cancer-cell-line-specific essential genes
genes database essential
updated 2.5 years ago by 88k • written 2.5 years ago by ▴ 300
3
votes
1
reply
504
views
Disease-specific SNPs. Any databases?
SNP database
updated 2.6 years ago by 88k • written 2.6 years ago by ▴ 300
0
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0
replies
482
views
Lasso for survival analysis: Expression dichotomization necessary or not?
Dichotomization Lasso survival
2.9 years ago by english.server ▴ 300
1
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1
reply
1.0k
views
Comment: Comment: 3d structure without PDB
3.4 years ago by english.server ▴ 300
1
vote
0
replies
448
views
Comparing distribution of microarray data to that of RNA-seq data
distribution
3.4 years ago by english.server ▴ 300
0
votes
1
reply
1.0k
views
Answer: Answer: 3d structure without PDB
3.4 years ago by english.server ▴ 300
1
vote
1
reply
979
views
Correcting for batch effect in survival data
survival batch-effect
updated 3 months ago by 44k • written 3.6 years ago by ▴ 300
1
vote
0
replies
934
views
TCGA methylation data analysis. beta values to differentially regulated CpGs
methylation beta values DMP
3.8 years ago by english.server ▴ 300
1
vote
1
reply
4.1k
views
Comparing two different COX models in R
survival classification coxph
3.9 years ago by english.server ▴ 300
0
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0
replies
546
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How to find (all) transcripion factors of a certin cell type/tissue?
transciption factor database
3.9 years ago by english.server ▴ 300
0
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0
replies
1.3k
views
Comment: C: Clustering/Hetamap of count RNAseq data
3.9 years ago by english.server ▴ 300
4
votes
3
replies
1.3k
views
Clustering/Hetamap of count RNAseq data
RNA-Seq Normalization
updated 3.9 years ago by 85k • written 3.9 years ago by ▴ 300
1
vote
0
replies
1.3k
views
Comment: C: Clustering/Hetamap of count RNAseq data
3.9 years ago by english.server ▴ 300
0
votes
1
reply
9.7k
views
Comment: C: Predicting survival of cancer patients using glmnet cox
4.0 years ago by english.server ▴ 300
1
vote
0
replies
1.0k
views
Comment: C: Identify small strings in a larger sequence in R
4.0 years ago by english.server ▴ 300
0
votes
1
reply
9.7k
views
Comment: C: Predicting survival of cancer patients using glmnet cox
4.0 years ago by english.server ▴ 300
0
votes
0
replies
1.1k
views
Comment: C: P-value adjustment for diffreent classes each tested individually
4.0 years ago by english.server ▴ 300
1
vote
2
replies
1.1k
views
P-value adjustment for diffreent classes each tested individually
survival p-value adjustment
4.0 years ago by english.server ▴ 300
0
votes
0
replies
2.2k
views
Comment: C: Hazard ratio for many genes (gene signature)
4.2 years ago by english.server ▴ 300
0
votes
0
replies
2.2k
views
Comment: C: Hazard ratio for many genes (gene signature)
4.2 years ago by english.server ▴ 300
0
votes
2
replies
2.2k
views
Comment: C: Hazard ratio for many genes (gene signature)
4.2 years ago by english.server ▴ 300
0
votes
2
replies
2.2k
views
Comment: C: Hazard ratio for many genes (gene signature)
4.2 years ago by english.server ▴ 300
7
votes
9
replies
2.2k
views
Hazard ratio for many genes (gene signature)
survival analysis R
4.2 years ago by english.server ▴ 300
0
votes
1
reply
1.3k
views
Comment: C: Inconsistent survival times in TCGA clinicalMatrix file?
4.3 years ago by english.server ▴ 300
2
votes
3
replies
1.3k
views
Inconsistent survival times in TCGA clinicalMatrix file?
survival analysis TCGA data
updated 4.3 years ago by 88k • written 4.3 years ago by ▴ 300
0
votes
1
reply
1.2k
views
Comment: C: Too many RNAseq samples. What to do?
4.3 years ago by english.server ▴ 300
5
votes
6
replies
1.2k
views
Too many RNAseq samples. What to do?
RNA-Seq deseq2 edger
4.3 years ago by english.server ▴ 300
0
votes
0
replies
1.2k
views
Comment: C: Too many RNAseq samples. What to do?
4.3 years ago by english.server ▴ 300
0
votes
0
replies
4.0k
views
Comment: C: Differential gene expression, starting from RSEM expected count values.
4.8 years ago by english.server ▴ 300
9
votes
5
replies
4.0k
views
Differential gene expression, starting from RSEM expected count values.
rsem expected-count deseq2
updated 4.8 years ago by 20k • written 4.8 years ago by ▴ 300
1
vote
0
replies
1.5k
views
Comment: C: Survival analysis: Why to categorize age?
4.8 years ago by english.server ▴ 300
0
votes
1
reply
1.5k
views
Comment: C: Survival analysis: Why to categorize age?
4.8 years ago by english.server ▴ 300
2
votes
1
reply
1.5k
views
Comment: C: Survival analysis: Why to categorize age?
4.8 years ago by english.server ▴ 300
0
votes
1
reply
1.5k
views
Comment: C: Survival analysis: Why to categorize age?
4.8 years ago by english.server ▴ 300
14
votes
9
replies
1.5k
views
Survival analysis: Why to categorize age?
survival
updated 4.8 years ago by 88k • written 4.8 years ago by ▴ 300
0
votes
0
replies
1.1k
views
Comment: C: DEG, wilcoxon, p value adjustment
4.9 years ago by english.server ▴ 300
2
votes
2
replies
1.1k
views
DEG, wilcoxon, p value adjustment
RNA-Seq
4.9 years ago by english.server ▴ 300
0
votes
0
replies
3.7k
views
Comment: C: Tophat's Mean Inner Distance between Mate Pairs
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 300
0
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0
replies
1.3k
views
Comment: C: Removing certain levels of Batch before batch effect correction
5.2 years ago by english.server ▴ 300
0
votes
1
reply
1.3k
views
Comment: C: Removing certain levels of Batch before batch effect correction
5.2 years ago by english.server ▴ 300
5
votes
6
replies
1.3k
views
Removing certain levels of Batch before batch effect correction
batch management diferential expression
5.2 years ago by english.server ▴ 300
0
votes
1
reply
1.3k
views
Comment: C: Batch removal VS batch effect correction
5.2 years ago by english.server ▴ 300
0
votes
0
replies
1.8k
views
Comment: C: miRanda Match score and Free energy cut-offs
5.2 years ago by english.server ▴ 300
2
votes
2
replies
3.0k
views
Are the values in geo .soft files log2 transformed or normalized?
geo .soft files
updated 5.2 years ago by 20 • written 9.1 years ago by ▴ 300
0
votes
0
replies
1.4k
views
Comment: C: Robust rank aggregation with imprecise p values
5.2 years ago by english.server ▴ 300
0
votes
1
reply
1.4k
views
Comment: C: Robust rank aggregation with imprecise p values
5.2 years ago by english.server ▴ 300
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