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Comment: Comment: What current tools are used to phase haplotypes from a FASTQ file?
3.2 years ago by 4galaxy77 2.9k
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1
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1.9k
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Comment: Comment: Is it possible to construct a full genome from whole sequence VCF files containi
3.2 years ago by 4galaxy77 2.9k
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0
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737
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Comment: Comment: Losing ~60% of variants from sequence data after phasing with SHAPEIT
3.2 years ago by 4galaxy77 2.9k
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0
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592
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Comment: Comment: vcffile
3.2 years ago by 4galaxy77 2.9k
1
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1
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1.6k
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Comment: Comment: WHAT IS NA12878?
3.2 years ago by 4galaxy77 2.9k
1
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3.2k
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Comment: Comment: Changing the sample IDs of a bed/bim/fam PLINK fileset
3.2 years ago by 4galaxy77 2.9k
1
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0
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3.2k
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Comment: Comment: Changing the sample IDs of a bed/bim/fam PLINK fileset
3.2 years ago by 4galaxy77 2.9k
0
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1
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863
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Comment: Comment: Regarding Error query
3.2 years ago by 4galaxy77 2.9k
0
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0
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934
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Answer: Answer: Where to find public human WGS fastq not from 1KGP?
3.2 years ago by 4galaxy77 2.9k
6
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2.4k
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Answer: Answer: linux for genomics
3.3 years ago by 4galaxy77 2.9k
1
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1
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3.4k
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Comment: Comment: Error when Phasing with Beagle 5.2
3.3 years ago by 4galaxy77 2.9k
1
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2
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1.4k
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Comment: Comment: How to sub-sample .bam file to target coverage?
3.3 years ago by 4galaxy77 2.9k
0
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1
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1.4k
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Comment: Comment: Convert a VCF-file in a user specific Format
3.3 years ago by 4galaxy77 2.9k
0
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0
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7.2k
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Comment: Comment: VCF file phasing by SHAPEIT
3.3 years ago by 4galaxy77 2.9k
1
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0
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2.7k
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Comment: Comment: Beagple 5.2 phasing error
3.3 years ago by 4galaxy77 2.9k
0
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1
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2.7k
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Comment: Comment: Beagple 5.2 phasing error
3.3 years ago by 4galaxy77 2.9k
2
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1
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971
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Comment: Comment: PCA results shows mixed population ?
3.3 years ago by 4galaxy77 2.9k
0
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1
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915
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Comment: Comment: Are there risks to use a GRCh38 gtf and a hg19 fa in alignment?
3.4 years ago by 4galaxy77 2.9k
1
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1
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1.3k
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Comment: Comment: Convert missing genotype ./. to homozygous 0/0 in vcf
3.4 years ago by 4galaxy77 2.9k
1
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1
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1.4k
views
Comment: Comment: Haplotype phasing with Beagle on microarray output VCF, tunning suggestions?
3.4 years ago by 4galaxy77 2.9k
0
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0
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880
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Comment: Comment: Genotype imputation - do SNP IDs of input files and reference panels matter?
3.4 years ago by 4galaxy77 2.9k
1
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1
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1.3k
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Comment: Comment: Issue installing Plink
3.4 years ago by 4galaxy77 2.9k
0
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0
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1.5k
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Comment: Comment: IMPUTE2 minimal number of SNPs per chunk
3.4 years ago by 4galaxy77 2.9k
0
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1
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1.5k
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Comment: Comment: IMPUTE2 minimal number of SNPs per chunk
3.4 years ago by 4galaxy77 2.9k
1
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1
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4.6k
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Comment: Comment: Merge bgen,bgen.bgi,and .sample file from uk biobank
3.4 years ago by 4galaxy77 2.9k
3
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0
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5.4k
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Answer: Answer: What is the difference between SNP and a mutation ?
3.4 years ago by 4galaxy77 2.9k
1
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0
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1.7k
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Comment: Comment: Bioinformaticist or computational biologist opportunity in metagenomics
3.4 years ago by 4galaxy77 2.9k
0
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1
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2.0k
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Comment: Comment: conform-gt error "Non-unique marker ID: ."
3.4 years ago by 4galaxy77 2.9k
1
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0
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2.9k
views
Answer: Answer: problem for installing packages
3.4 years ago by 4galaxy77 2.9k
3
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0
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802
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Comment: Comment: whole genome analyses
3.4 years ago by 4galaxy77 2.9k
1
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2
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1.8k
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Comment: Comment: Mask a SNP before imputation
3.4 years ago by 4galaxy77 2.9k
0
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0
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1.8k
views
Comment: Comment: Can't index .bed file with tabix
3.4 years ago by 4galaxy77 2.9k
1
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1
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1.8k
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Comment: Comment: Mask a SNP before imputation
3.4 years ago by 4galaxy77 2.9k
0
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0
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1.0k
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Comment: Comment: Duplicate ID in plink
3.4 years ago by 4galaxy77 2.9k
1
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0
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813
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Comment: Comment: Is the use of conform-gt viable if the target data has only one sample?
3.5 years ago by 4galaxy77 2.9k
1
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1
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3.0k
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Comment: Comment: Amount of unique variants in VCF with linux terminal
3.5 years ago by 4galaxy77 2.9k
1
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0
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768
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Comment: Comment: Unable to read fasta file
3.5 years ago by 4galaxy77 2.9k
0
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0
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907
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Comment: Comment: Find sequence/variants from ancient-DNA genomes
3.5 years ago by 4galaxy77 2.9k
0
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1
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907
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Answer: Answer: Find sequence/variants from ancient-DNA genomes
3.5 years ago by 4galaxy77 2.9k
0
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0
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950
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Comment: Comment: Converting plink to GenEpi files
3.5 years ago by 4galaxy77 2.9k
0
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0
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2.4k
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Comment: Comment: install R package
3.5 years ago by 4galaxy77 2.9k
0
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1
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1.6k
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Comment: Comment: Seqff.r script is giving error while running
3.5 years ago by 4galaxy77 2.9k
0
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0
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1.4k
views
Comment: Comment: Duplicate ID error with update-name flag
3.5 years ago by 4galaxy77 2.9k
1
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1
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1.4k
views
Comment: Comment: Duplicate ID error with update-name flag
3.5 years ago by 4galaxy77 2.9k
1
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0
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1.1k
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Comment: Comment: Imputation with Beagle 5.2 for whole exome data at once
3.5 years ago by 4galaxy77 2.9k
0
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1
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2.7k
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Comment: Comment: bcftools plugin fill-tags with functions
3.5 years ago by 4galaxy77 2.9k
0
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1
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3.7k
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Comment: Comment: Hello anybody.I can't prefetch in linux.pls guid me
3.5 years ago by 4galaxy77 2.9k
1
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1
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5.0k
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Answer: Answer: How to remove samples with no genotypes from vcf
3.5 years ago by 4galaxy77 2.9k
0
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0
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965
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Comment: Comment: Example of simple repository using htslib API to read in .bcf
3.5 years ago by 4galaxy77 2.9k
2
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2
replies
965
views
Example of simple repository using htslib API to read in .bcf
htslib
3.5 years ago by 4galaxy77 2.9k
439 results • Page 6 of 9
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