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Comment: C: ChIP-seq Genome Coverage
9.0 years ago by Fidel ★ 2.0k
1
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0
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2.3k
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Comment: C: Finding histone modification enrichment specific loci using modENCODE data
9.0 years ago by Fidel ★ 2.0k
1
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1
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2.7k
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Comment: C: Separating gene list into chromatin domains
9.0 years ago by Fidel ★ 2.0k
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0
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3.4k
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Comment: C: How to describe this figure
9.0 years ago by Fidel ★ 2.0k
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1
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5.3k
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Answer: Answer: Python multiprocessing FASTQ file
updated 2.6 years ago by 44k • written 9.0 years ago by ★ 2.0k
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0
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9.8k
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Comment: Comment: Why does base quality of reads generally decreases at the end of the read?
updated 2.6 years ago by 44k • written 9.0 years ago by ★ 2.0k
2
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1
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3.6k
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Answer: Answer: Discovering motifs for core promoter elements on a set of enhancer sites
updated 2.6 years ago by 44k • written 9.1 years ago by ★ 2.0k
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0
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8.4k
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Comment: Comment: Visualising the number of overlapping peaks in ChIP-seq studies
updated 2.6 years ago by 44k • written 9.1 years ago by ★ 2.0k
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1
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6.4k
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Comment: C: Merging many BAM files
9.1 years ago by Fidel ★ 2.0k
2
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1
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6.4k
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Comment: C: Merging many BAM files
9.1 years ago by Fidel ★ 2.0k
2
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0
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3.2k
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Answer: Answer: Individual colors for heatmaps using ngsplot
updated 2.6 years ago by 44k • written 9.1 years ago by ★ 2.0k
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0
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2.6k
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Answer: A: Comparison of two MeDip data sets
9.1 years ago by Fidel ★ 2.0k
3
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0
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9.4k
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Comment: Comment: Pearson Correlation test between two Chip-Seq data sets
updated 2.6 years ago by 44k • written 9.1 years ago by ★ 2.0k
1
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0
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3.0k
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Answer: A: Generating a strand specific heatmap of ChIP-Seq Data
9.2 years ago by Fidel ★ 2.0k
2
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1
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2.9k
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Answer: Answer: Re-creating a published figure
updated 2.6 years ago by 44k • written 9.2 years ago by ★ 2.0k
2
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0
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8.7k
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Answer: Answer: Deeptools sample scaling
updated 2.6 years ago by 44k • written 9.2 years ago by ★ 2.0k
2
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1
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4.3k
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Comment: Comment: Exon Center signal maps (metagene plots) using deepTools
updated 2.6 years ago by 44k • written 9.2 years ago by ★ 2.0k
1
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1
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4.1k
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Comment: Comment: What is the best way to plot distribution of peak heights?
updated 2.5 years ago by 44k • written 9.3 years ago by ★ 2.0k
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1
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4.1k
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Comment: Comment: What is the best way to plot distribution of peak heights?
updated 2.5 years ago by 44k • written 9.3 years ago by ★ 2.0k
0
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1
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9.5k
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Comment: C: how to merge overlapping intervals in a bedgraph file
9.3 years ago by Fidel ★ 2.0k
0
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0
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4.4k
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Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
9.3 years ago by Fidel ★ 2.0k
1
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2
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5.1k
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Answer: Answer: NGS plot error
updated 2.6 years ago by 44k • written 9.4 years ago by ★ 2.0k
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0
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2.5k
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Comment: C: getting base count (coverage) based on BAM file with strand information
9.4 years ago by Fidel ★ 2.0k
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0
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9.2k
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Comment: Comment: How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) I
updated 2.5 years ago by 44k • written 9.4 years ago by ★ 2.0k
2
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0
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9.2k
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Answer: Answer: How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) I
updated 2.5 years ago by 44k • written 9.4 years ago by ★ 2.0k
1
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0
replies
14k
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Comment: C: Chipseq Wig File With The Input Subtracted From Chip Sample
9.5 years ago by Fidel ★ 2.0k
2
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0
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3.3k
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Answer: Answer: H3K4me3 occupancy visualisation
updated 2.5 years ago by 44k • written 9.5 years ago by ★ 2.0k
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2
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14k
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Comment: Comment: Chipseq Wig File With The Input Subtracted From Chip Sample
updated 2.5 years ago by 44k • written 9.5 years ago by ★ 2.0k
0
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0
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3.5k
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Comment: Comment: Error while running computeMatrix of deepTools
updated 2.4 years ago by 44k • written 9.5 years ago by ★ 2.0k
0
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1
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7.0k
views
Comment: Comment: Making TSS plots for some genes for a particular histone mark
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.0k
2
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1
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7.0k
views
Answer: Answer: Making TSS plots for some genes for a particular histone mark
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.0k
1
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0
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2.6k
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Comment: C: Can Tophat2 Align a Book?
9.6 years ago by Fidel ★ 2.0k
0
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0
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2.9k
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Comment: Comment: How to convert between gene ontology file formats
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.0k
1
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2
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2.8k
views
Answer: Answer: analysis of deletion/insertion from mitochondria NGS data
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.0k
4
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1
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2.9k
views
Answer: Answer: How to convert between gene ontology file formats
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.0k
0
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0
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4.6k
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Comment: Comment: Normalization of DNase-seq samples with globally different chromatin structures
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 2.0k
0
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1
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4.6k
views
Answer: Answer: Normalization of DNase-seq samples with globally different chromatin structures
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 2.0k
5
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0
replies
2.3k
views
Answer: Answer: Different qualities of genomes - Is there a standard/definition?
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 2.0k
1
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1
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3.4k
views
Answer: Answer: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 2.0k
0
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0
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5.3k
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Comment: Comment: The best definition to Enhancer and Promoter?
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 2.0k
0
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1
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5.7k
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Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.6 years ago by Fidel ★ 2.0k
2
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1
reply
5.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.6 years ago by Fidel ★ 2.0k
1
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1
reply
5.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.6 years ago by Fidel ★ 2.0k
1
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1
reply
1.9k
views
Answer: Answer: QC of ChIPseq data (controlling false negatives)
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 2.0k
1
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0
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4.5k
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Comment: Comment: Analysis Big Data from Hi-C--> a way to find significant interaction?
updated 2.2 years ago by 44k • written 9.7 years ago by ★ 2.0k
0
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0
replies
15k
views
Comment: Comment: Plotting Reads Around Tss
updated 2.2 years ago by 44k • written 9.7 years ago by ★ 2.0k
0
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1
reply
2.7k
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Comment: C: Homer for NGS analysis
9.9 years ago by Fidel ★ 2.0k
1
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0
replies
3.0k
views
Answer: Answer: How to check whether two genomic regions contact in 3D?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.0k
0
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0
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2.2k
views
Comment: Comment: Assessing significance of protein binding data inside defined genomic intervals
updated 3.2 years ago by 44k • written 10.0 years ago by ★ 2.0k
0
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0
replies
2.1k
views
Comment: C: how to retreive and download sequence information
10.0 years ago by Fidel ★ 2.0k
159 results • Page 2 of 4
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