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Comment: C: Tips for miRNA-Seq analysis
4.4 years ago by Arindam Ghosh ▴ 530
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19k
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Comment: C: WGCNA modules and categorical traits relationship
4.4 years ago by Arindam Ghosh ▴ 530
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1
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48k
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Comment: A: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.5 years ago by Arindam Ghosh ▴ 530
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1
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19k
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Comment: C: WGCNA modules and categorical traits relationship
4.5 years ago by Arindam Ghosh ▴ 530
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1
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19k
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Comment: C: WGCNA modules and categorical traits relationship
4.5 years ago by Arindam Ghosh ▴ 530
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1
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1.8k
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Comment: C: Correlating WGCNA modules to Diseased/Not-Diseased Trait
4.5 years ago by Arindam Ghosh ▴ 530
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1
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4.7k
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Comment: C: How to analyze differentially expressed lncRNA from total RNA
4.6 years ago by Arindam Ghosh ▴ 530
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4.0k
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Comment: C: Can ncRNAs be found from all RNA-seq data?
4.6 years ago by Arindam Ghosh ▴ 530
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0
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76k
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Comment: C: Extract fasta sequences from a file using a list in another file.
4.6 years ago by Arindam Ghosh ▴ 530
1
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2
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943
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How to identify ZNFs from a gene list?
protein domain pfam uniprot
updated 4.7 years ago by 164k • written 4.7 years ago by ▴ 530
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1
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10k
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Comment: C: WGCNA export Network To Cytoscape without trait data, error "Cannot determine no
4.8 years ago by Arindam Ghosh ▴ 530
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3.8k
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Comment: C: WGCNA and VisAnt
4.8 years ago by Arindam Ghosh ▴ 530
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1
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7.9k
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Comment: C: A good pipeline for GO term analysis on RNA-seq Clusters in R?
4.8 years ago by Arindam Ghosh ▴ 530
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0
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3.1k
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Comment: C: Question about gene ontology data visualization
4.8 years ago by Arindam Ghosh ▴ 530
0
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1
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7.9k
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Comment: C: A good pipeline for GO term analysis on RNA-seq Clusters in R?
4.8 years ago by Arindam Ghosh ▴ 530
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0
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7.7k
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Comment: C: genlist for clusterprofiler
4.8 years ago by Arindam Ghosh ▴ 530
1
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1
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1.4k
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Compact visualisation of enrichment analysis
RNA-Seq gene ontology PANTHER DAVID REVIGO
updated 4.8 years ago by ★ 2.6k • written 4.8 years ago by ▴ 530
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0
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11k
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Comment: C: What is the meaning of "weight" in the WGCNA Cytoscape edge output file?
4.8 years ago by Arindam Ghosh ▴ 530
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0
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687
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Signed hybrid network vs up/down -reg network
WGCNA network
4.9 years ago by Arindam Ghosh ▴ 530
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0
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2.8k
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Comment: C: up regulated and down regulated genes in co expression network
4.9 years ago by Arindam Ghosh ▴ 530
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0
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2.4k
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Comment: C: Gene Ontology visualisation webservice in 2017
4.9 years ago by Arindam Ghosh ▴ 530
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1
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3.7k
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Comment: C: What is the need for signed or signed hybrid (as in WGCNA) co-expression network
4.9 years ago by Arindam Ghosh ▴ 530
2
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3
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3.7k
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What is the need for signed or signed hybrid (as in WGCNA) co-expression networks?
wgcna network
updated 4.9 years ago by 3.8k • written 4.9 years ago by ▴ 530
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0
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11k
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Comment: C: WGCNA- Large number of genes clustering under one Module
5.0 years ago by Arindam Ghosh ▴ 530
0
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1
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15k
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Comment: C: How to find the hub genes in the gene co-expression network constructed by WGCNA
5.0 years ago by Arindam Ghosh ▴ 530
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0
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6.8k
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Comment: C: How can I increase the sensitivity of WGCNA modules?
5.0 years ago by Arindam Ghosh ▴ 530
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0
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5.2k
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Comment: C: Why does biomart return multiple Entrez IDs
5.0 years ago by Arindam Ghosh ▴ 530
0
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1
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3.4k
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Comment: C: Why is the number of genes in certain a module in WGCNA super high?
5.0 years ago by Arindam Ghosh ▴ 530
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2
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7.0k
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Comment: C: Consensus WGCNA: soft-threshold power selection
5.0 years ago by Arindam Ghosh ▴ 530
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1
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3.4k
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Comment: C: Why is the number of genes in certain a module in WGCNA super high?
5.0 years ago by Arindam Ghosh ▴ 530
0
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0
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3.8k
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Comment: C: WGCNA network with condition and normal samples
5.0 years ago by Arindam Ghosh ▴ 530
0
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1
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3.4k
views
Comment: C: Why is the number of genes in certain a module in WGCNA super high?
5.0 years ago by Arindam Ghosh ▴ 530
0
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0
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1.8k
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Comment: C: Gene Coexpression Network Construction
5.0 years ago by Arindam Ghosh ▴ 530
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0
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3.1k
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Comment: C: HISAT2 Error Building Index
5.0 years ago by Arindam Ghosh ▴ 530
2
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1
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1.8k
views
Threshold in WGCNA
RNA-Seq wgcna
5.1 years ago by Arindam Ghosh ▴ 530
1
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0
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3.6k
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Answer: A: How to construct co-expression network with correlation matrix?
5.1 years ago by Arindam Ghosh ▴ 530
0
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1
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4.0k
views
Answer: A: Correlation matrix from deseq2 results
5.1 years ago by Arindam Ghosh ▴ 530
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0
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2.9k
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Comment: C: Low pseudo-alignment rate with Kallisto
5.1 years ago by Arindam Ghosh ▴ 530
7
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2
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10k
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What is a good Trimmomatic parameter?
trimmomatic RNA-Seq ngs sequencing
updated 5.2 years ago by ▴ 10 • written 6.5 years ago by ▴ 530
0
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0
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6.5k
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Comment: C: normalization RNA-seq data between different types of libraries
5.2 years ago by Arindam Ghosh ▴ 530
0
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1
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4.1k
views
Answer: A: interval_list for hg38
5.2 years ago by Arindam Ghosh ▴ 530
0
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0
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9.8k
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Comment: C: Post alignment QC of RNA-seq data
5.3 years ago by Arindam Ghosh ▴ 530
0
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0
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20k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.3 years ago by Arindam Ghosh ▴ 530
13
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13
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20k
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How to interpret Per sequence GC content module in FastQC for RNA-seq data?
RNA-Seq FastQC QC GC-content
5.3 years ago by Arindam Ghosh ▴ 530
0
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0
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12k
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Comment: C: Bimodal GC content
5.3 years ago by Arindam Ghosh ▴ 530
0
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1
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9.8k
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Comment: C: Post alignment QC of RNA-seq data
5.3 years ago by Arindam Ghosh ▴ 530
0
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0
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12k
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Comment: C: 3' Bias in RNASEQ data
5.3 years ago by Arindam Ghosh ▴ 530
0
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0
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4.7k
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Comment: C: featureCounts for aligned reads
5.3 years ago by Arindam Ghosh ▴ 530
0
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0
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2.4k
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Comment: C: FetureCounts low assigned rate and its weird total number counts?
5.3 years ago by Arindam Ghosh ▴ 530
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0
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4.3k
views
Comment: C: Extremely low assigned reads in featureCounts
5.3 years ago by Arindam Ghosh ▴ 530
222 results • Page 2 of 5
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