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Comment: C: Metagenomics data analysis
4.8 years ago by hafiz.talhamalik ▴ 350
0
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1
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787
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Getting information of individual sample from merged sample
vcf sequencing alignment
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 350
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858
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Answer: A: HTSeq-count, Differential Gene Expression using a GFF to count exons annotations
5.0 years ago by hafiz.talhamalik ▴ 350
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1
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1.6k
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Comment: C: tools for MLST analysis
5.0 years ago by hafiz.talhamalik ▴ 350
7
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5
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1.6k
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tools for MLST analysis
ngs wgs next-gen
5.0 years ago by hafiz.talhamalik ▴ 350
4
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0
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1.4k
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Answer: A: Assembly quality check
5.0 years ago by hafiz.talhamalik ▴ 350
3
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7
replies
1.5k
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Extract Transcript sequence from fastq file (Plant RNA-Seq data)
RNA-Seq
updated 5.0 years ago by ★ 4.1k • written 5.0 years ago by ▴ 350
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1
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1.5k
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Comment: C: Extract Transcript sequence from fastq file (Plant RNA-Seq data)
5.0 years ago by hafiz.talhamalik ▴ 350
0
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1
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1.5k
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Comment: C: Extract Transcript sequence from fastq file (Plant RNA-Seq data)
5.0 years ago by hafiz.talhamalik ▴ 350
1
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0
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1.2k
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Comment: A: Detecting copy number variants from whole-exome sequencing data
5.1 years ago by hafiz.talhamalik ▴ 350
2
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0
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2.1k
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Answer: A: Determine number and length of plasmids in bacterial genome (using something lik
5.1 years ago by hafiz.talhamalik ▴ 350
0
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9
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3.9k
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GATK Error Message: Invalid argument value 'RealignerTargetCreator at position' 0
SNP vcf Gatk
updated 5.1 years ago by ▴ 10 • written 5.5 years ago by ▴ 350
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2.4k
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Comment: A: How to get chrM chr1 ...chr22 chrX chrY order in my bam file
5.1 years ago by hafiz.talhamalik ▴ 350
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1.9k
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Comment: C: STAR mapping parameter
5.1 years ago by hafiz.talhamalik ▴ 350
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1
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4.4k
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Comment: C: GPU based parallel processing in genomics tools
5.1 years ago by hafiz.talhamalik ▴ 350
24
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16
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4.4k
views
8 follow
GPU based parallel processing in genomics tools
assembly ngs softwares
updated 5.1 years ago by 13k • written 5.1 years ago by ▴ 350
1
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2
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4.4k
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Comment: A: GPU based parallel processing in genomics tools
5.1 years ago by hafiz.talhamalik ▴ 350
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0
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4.4k
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Comment: C: GPU based parallel processing in genomics tools
5.1 years ago by hafiz.talhamalik ▴ 350
0
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1
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4.4k
views
Comment: C: GPU based parallel processing in genomics tools
5.1 years ago by hafiz.talhamalik ▴ 350
0
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1
reply
3.6k
views
Comment: C: How can I select highly variable genes from the RNASeq gene dataset?
5.1 years ago by hafiz.talhamalik ▴ 350
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5
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2.7k
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assembler for viral genome sequencing data
assembly virus genome
updated 5.2 years ago by 11k • written 5.2 years ago by ▴ 350
0
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1
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2.7k
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Comment: C: assembler for vial genome sequencing data
5.2 years ago by hafiz.talhamalik ▴ 350
0
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0
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924
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Comment: C: Are there any tools for transcriptome reassembly and/or tailoring existing refer
5.2 years ago by hafiz.talhamalik ▴ 350
1
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0
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1.4k
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Comment: C: Detection of antibiotic resistance genes in shotgun metagenomic samples
5.2 years ago by hafiz.talhamalik ▴ 350
1
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2
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1.4k
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Comment: C: Detection of antibiotic resistance genes in shotgun metagenomic samples
5.2 years ago by hafiz.talhamalik ▴ 350
2
votes
6
replies
1.5k
views
How to separate sequences of two species from Metagenomics Analysis?
genome wholegenome metagenomics Assembly
updated 5.2 years ago by 20 • written 5.9 years ago by ▴ 350
1
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0
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1.0k
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Comment: C: how to create a gene co-expression network?
5.2 years ago by hafiz.talhamalik ▴ 350
0
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0
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1.0k
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Comment: C: Help with data from rna-seq
5.3 years ago by hafiz.talhamalik ▴ 350
0
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0
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1.1k
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Comment: C: Problem in featureCounts file.
5.3 years ago by hafiz.talhamalik ▴ 350
0
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1
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1.1k
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Comment: C: Problem in featureCounts file.
5.3 years ago by hafiz.talhamalik ▴ 350
1
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5
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1.1k
views
Problem in featureCounts file.
RNA-Seq rna-seq featureCounts
updated 5.3 years ago by 147k • written 5.3 years ago by ▴ 350
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0
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3.2k
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Comment: C: Differential Expression between 3 groups ?
5.4 years ago by hafiz.talhamalik ▴ 350
5
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4
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3.2k
views
Differential Expression between 3 groups ?
RNA-Seq edge-R rna-seq R
updated 5.4 years ago by 85k • written 5.4 years ago by ▴ 350
0
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0
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3.2k
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Comment: C: Differential Expression between 3 groups ?
5.4 years ago by hafiz.talhamalik ▴ 350
0
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1
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3.9k
views
Comment: C: GATK Error Message: Invalid argument value 'RealignerTargetCreator at position'
updated 5.5 years ago by 85k • written 5.5 years ago by ▴ 350
0
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1
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3.9k
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Answer: A: GATK Error Message: Invalid argument value 'RealignerTargetCreator at position'
5.5 years ago by hafiz.talhamalik ▴ 350
0
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0
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3.9k
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Comment: C: GATK Error Message: Invalid argument value 'RealignerTargetCreator at position'
5.5 years ago by hafiz.talhamalik ▴ 350
0
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1
reply
3.9k
views
Comment: C: GATK Error Message: Invalid argument value 'RealignerTargetCreator at position'
5.5 years ago by hafiz.talhamalik ▴ 350
6
votes
7
replies
9.8k
views
Threshold of removing genes with low counts ?
RNA-Seq
updated 5.5 years ago by ▴ 80 • written 7.6 years ago by ▴ 350
0
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1
reply
2.0k
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Comment: C: Usearch fatal error 'CharToIntQUal('M). phred score 44 out of range 0..42,base 3
5.5 years ago by hafiz.talhamalik ▴ 350
1
vote
4
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2.0k
views
Usearch fatal error 'CharToIntQUal('M). phred score 44 out of range 0..42,base 33
metagenomics usearch
5.5 years ago by hafiz.talhamalik ▴ 350
0
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0
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2.6k
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Comment: C: How to do simple pathway analysis?
5.5 years ago by hafiz.talhamalik ▴ 350
1
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0
replies
1.6k
views
Comment: C: Help me interpret the output of Trinity/edgeR
5.5 years ago by hafiz.talhamalik ▴ 350
0
votes
1
reply
3.8k
views
Comment: C: fastq file format error
5.5 years ago by hafiz.talhamalik ▴ 350
1
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1
reply
3.8k
views
Comment: C: fastq file format error
5.5 years ago by hafiz.talhamalik ▴ 350
0
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2
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3.8k
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Comment: C: fastq file format error
5.5 years ago by hafiz.talhamalik ▴ 350
8
votes
12
replies
3.8k
views
fastq file format error
fastq illumina
updated 5.5 years ago by 164k • written 5.5 years ago by ▴ 350
0
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1
reply
1.7k
views
Comment: C: I am not getting any plasmid in my mircobial genome data? why is it so ?
5.5 years ago by hafiz.talhamalik ▴ 350
0
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0
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1.7k
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Comment: C: I am not getting any plasmid in my mircobial genome data? why is it so ?
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 350
1
vote
7
replies
1.7k
views
I am not getting any plasmid in my mircobial genome data? why is it so ?
genome plasmid microbial genomics
5.5 years ago by hafiz.talhamalik ▴ 350
202 results • Page 3 of 5
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