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Comment: Comment: Identification of variants from Spatial Transcriptomics using STARSolo
15 days ago by kanika.151 ▴ 160
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3
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219
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Identification of variants from Spatial Transcriptomics using STARSolo
spatial-transcriptomics STAR visium
updated 15 days ago by 44k • written 15 days ago by ▴ 160
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3
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292
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lncRNA and mRNA analysis on Total RNA Sequencing data
mRNA RNASeq lncRNA
updated 5 weeks ago by 102k • written 5 weeks ago by ▴ 160
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323
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Answer: Answer: Getting gnomAD allele frequencies for checking against populations
5 weeks ago by kanika.151 ▴ 160
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292
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Comment: Comment: lncRNA and mRNA analysis on Total RNA Sequencing data
5 weeks ago by kanika.151 ▴ 160
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1.5k
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Comment: Comment: What is the difference between `possorted_genome_bam.bam` in the output of `cell
5 weeks ago by kanika.151 ▴ 160
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1.5k
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Comment: Comment: What is the difference between `possorted_genome_bam.bam` in the output of `cell
5 weeks ago by kanika.151 ▴ 160
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557
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Comment: Comment: Research Scientist - Bioinformatics position in Milan, Italy
6 weeks ago by kanika.151 ▴ 160
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2
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557
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Job: Research Scientist - Bioinformatics position in Milan, Italy
R Python RNASeq singleCell
6 weeks ago by kanika.151 ▴ 160
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657
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Answer: Answer: UMI RNASeq data analysis
2.5 years ago by kanika.151 ▴ 160
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1.7k
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Comment: Comment: Low mapping rate due to rRNA
2.6 years ago by kanika.151 ▴ 160
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1.1k
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Comment: Comment: About Whole Exome Sequencing analysis
2.6 years ago by kanika.151 ▴ 160
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688
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Answer: Answer: How to find Polygenic Risk Scores?
2.6 years ago by kanika.151 ▴ 160
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1.1k
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Answer: Answer: Extract R1 and R2 from sam file generated by bowtie2
2.6 years ago by kanika.151 ▴ 160
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0
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573
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GnomAD subset vcf files
exac gnomad population vcf subset
2.6 years ago by kanika.151 ▴ 160
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3.1k
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Answer: Answer: Some questions about call variants for mtDNA using GATK HaplotypeCaller
2.7 years ago by kanika.151 ▴ 160
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4.4k
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Answer: Answer: Read Counts from miRDeep2 for posterior DE analysis
3.1 years ago by kanika.151 ▴ 160
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3.9k
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Answer: Answer: How to generate the contigs ploidy priors table (yeast) for GATK DetermineGermli
3.1 years ago by kanika.151 ▴ 160
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12k
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Comment: Comment: Relatedness vs relatedness2 from vcftools give different results
3.3 years ago by kanika.151 ▴ 160
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3.0k
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Comment: Comment: Using wildcards in function in rules
3.6 years ago by kanika.151 ▴ 160
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1
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3.0k
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Comment: Comment: Using wildcards in function in rules
3.6 years ago by kanika.151 ▴ 160
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1
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3.0k
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Comment: Comment: Using wildcards in function in rules
3.6 years ago by kanika.151 ▴ 160
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1
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3.0k
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Comment: Comment: Using wildcards in function in rules
3.6 years ago by kanika.151 ▴ 160
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3.0k
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Answer: Answer: Using wildcards in function in rules
3.6 years ago by kanika.151 ▴ 160
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2
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1.1k
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Answer: Answer: Snakemake error
3.6 years ago by kanika.151 ▴ 160
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0
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6.3k
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Answer: Answer: Difficulty filtering VCF file with vcftools
3.6 years ago by kanika.151 ▴ 160
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4.8k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
3.6 years ago by kanika.151 ▴ 160
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0
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4.8k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
3.6 years ago by kanika.151 ▴ 160
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2.6k
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Comment: Comment: gene annotation with dbNSFP_gene
3.8 years ago by kanika.151 ▴ 160
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3.1k
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Answer: A: Suggest vcf filtered parameter for gatk VariantFiltration
3.8 years ago by kanika.151 ▴ 160
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3.6k
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Comment: C: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
3.8 years ago by kanika.151 ▴ 160
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2.2k
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Comment: C: counts reads for miRNA mapped againt mirbase
3.8 years ago by kanika.151 ▴ 160
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1
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3.6k
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Answer: A: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
3.8 years ago by kanika.151 ▴ 160
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1
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1.6k
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Comment: C: Non-coding region of WGS
3.9 years ago by kanika.151 ▴ 160
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1
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1.6k
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Comment: C: Non-coding region of WGS
3.9 years ago by kanika.151 ▴ 160
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1.9k
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Answer: Answer: Which VCF's to use for BQSR in GATK
updated 21 months ago by 44k • written 3.9 years ago by ▴ 160
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6
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1.4k
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Alignment in WES
trimmomatic alignment WES exome sequencing
updated 4.0 years ago by 20 • written 4.1 years ago by ▴ 160
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1
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1.4k
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Comment: C: Alignment in WES
4.1 years ago by kanika.151 ▴ 160
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1.4k
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Comment: C: Alignment in WES
4.1 years ago by kanika.151 ▴ 160
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1
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2.8k
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Answer: A: featureCounts with pseudobam
4.7 years ago by kanika.151 ▴ 160
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5.3k
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Comment: C: Error ecountered while running conifer with demo data set
4.9 years ago by kanika.151 ▴ 160
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0
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5.3k
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Comment: C: Error ecountered while running conifer with demo data set
4.9 years ago by kanika.151 ▴ 160
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0
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5.3k
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Comment: C: Error ecountered while running conifer with demo data set
4.9 years ago by kanika.151 ▴ 160
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0
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2.3k
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Answer: A: tables.exceptions.NoSuchNodeError: group ``/`` does not have a child named ``sam
4.9 years ago by kanika.151 ▴ 160
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5.3k
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Comment: C: Error ecountered while running conifer with demo data set
4.9 years ago by kanika.151 ▴ 160
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0
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4.1k
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Comment: C: 1 base pair to 'x' byte conversion
5.0 years ago by kanika.151 ▴ 160
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6
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4.1k
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1 base pair to 'x' byte conversion
fastq file cluster conversion base pairs byte
5.0 years ago by kanika.151 ▴ 160
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1
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4.1k
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Comment: A: 1 base pair to 'x' byte conversion
5.0 years ago by kanika.151 ▴ 160
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0
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740
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Answer: A: GATK Indelrealignment Problem : The input is truncated?
5.0 years ago by kanika.151 ▴ 160
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0
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19k
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Answer: A: Extract Dendrogram Information From Heatmap Generated By Heatmap.2
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 160
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