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0
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3.3k
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Comment: C: Automatically feeding a good mate inner distance to TopHat2
8.8 years ago by umn_bist ▴ 390
3
votes
2
replies
2.8k
views
Cutadapt paired end reads with 1 adapter list fasta
RNA-Seq Illumina cutadapt
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
3
votes
2
replies
3.1k
views
CGHub/TCGA RNA-Seq data trimming adapters
FastQC Illumina cutadapt SolexaQA-plus-plus RNA-Seq
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
0
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1
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15k
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Comment: C: Where to get list of all Illumina adapters
8.8 years ago by umn_bist ▴ 390
0
votes
1
reply
2.9k
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Comment: C: bcftools "The argument to -g not recognised"
8.8 years ago by umn_bist ▴ 390
2
votes
0
replies
5.2k
views
Good filtering practices for VCF (Bcftools 1.3)
RNA-Seq VCF bcftools samtools
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
7
votes
6
replies
15k
views
Where to get list of all Illumina adapters
RNA-Seq Illumina cutadapt adapters
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
4
votes
3
replies
2.5k
views
Using ref.fa (with random contig) on bam file aligned without random contigs
VCF samtools RNA-Seq bcftools
updated 2.6 years ago by 44k • written 8.8 years ago by ▴ 390
0
votes
1
reply
4.2k
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Comment: C: Reference and dbSNP incompatibility issue (MuTect2)
8.8 years ago by umn_bist ▴ 390
7
votes
8
replies
4.2k
views
Reference and dbSNP incompatibility issue (MuTect2)
ucsc.hg19.fa GATK RNA-Seq dbSNP Mutect2
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
0
votes
0
replies
4.2k
views
Comment: C: Reference and dbSNP incompatibility issue (MuTect2)
8.8 years ago by umn_bist ▴ 390
2
votes
3
replies
3.0k
views
Request for karyotypically sorted Ensembl reference fasta and its dbSNP vcf for GATK workflow
GATK RNA-Seq GrCh37 dbSNP ensembl
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
7
votes
2
replies
7.8k
views
Change chromosome notation to match a new reference
RNA-Seq
updated 8.8 years ago by 22k • written 8.8 years ago by ▴ 390
5
votes
10
replies
4.0k
views
Automating pre-alignment (and post-alignment) quality control
RNA-Seq FastQC Quality Control
updated 8.8 years ago by ★ 5.0k • written 8.8 years ago by ▴ 390
0
votes
1
reply
4.0k
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Comment: C: Automating pre-alignment (and post-alignment) quality control
8.8 years ago by umn_bist ▴ 390
0
votes
2
replies
3.2k
views
Comment: C: Mixed opinions on somatic variant calling method
8.8 years ago by umn_bist ▴ 390
0
votes
1
reply
3.2k
views
Comment: C: Mixed opinions on somatic variant calling method
8.8 years ago by umn_bist ▴ 390
8
votes
9
replies
3.2k
views
Mixed opinions on somatic variant calling method
RNA-Seq somatic mutation variant caller
8.8 years ago by umn_bist ▴ 390
0
votes
1
reply
9.0k
views
Comment: C: (samtools) Filtering and interpreting >100 QUAL scores
8.8 years ago by umn_bist ▴ 390
7
votes
2
replies
3.9k
views
Calling variants in blood tumor samples without matched normal samples
TCGA CTC Unmatched-normal
updated 8.8 years ago by 22k • written 8.8 years ago by ▴ 390
9
votes
7
replies
9.0k
views
(samtools) Filtering and interpreting >100 QUAL scores
pileup vcf phred-scaled-QUAL samtools
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 390
0
votes
0
replies
9.0k
views
Comment: C: (samtools) Filtering and interpreting >100 QUAL scores
8.8 years ago by umn_bist ▴ 390
0
votes
1
reply
9.0k
views
Comment: C: (samtools) Filtering and interpreting >100 QUAL scores
8.8 years ago by umn_bist ▴ 390
0
votes
1
reply
4.0k
views
TCGA database search
RNA-Seq
updated 8.9 years ago by ★ 1.1k • written 8.9 years ago by ▴ 390
124 results • Page 3 of 3
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