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5
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4
replies
5.6k
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GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
R GenomicFeatures
updated 3.2 years ago by 44k • written 9.4 years ago by ▴ 270
2
votes
2
replies
3.9k
views
[SOLVED] Trying to apply overlap to each row of a "GRangesList"
R loop apply
updated 2.4 years ago by 44k • written 9.4 years ago by ▴ 270
0
votes
0
replies
3.7k
views
Comment: C: Convert INDEL format for use in Annovar
8.4 years ago by User 7754 ▴ 270
0
votes
1
reply
3.7k
views
Comment: C: Convert INDEL format for use in Annovar
8.4 years ago by User 7754 ▴ 270
2
votes
5
replies
3.7k
views
Convert INDEL format for use in Annovar
annovar indel annotation insertion-deletion
updated 8.4 years ago by 13k • written 8.4 years ago by ▴ 270
4
votes
1
reply
3.0k
views
Is it possible to specify a reference allele while computing LD in Plink?
Plink allele
updated 2.4 years ago by 44k • written 9.4 years ago by ▴ 270
0
votes
0
replies
2.0k
views
IMPUTE2 reference allele: same as matrixEQTL?
SNP imputation impute2 matrixEQTL
8.7 years ago by User 7754 ▴ 270
0
votes
0
replies
3.6k
views
Comment: C: bedtools intersectBed and GRanges countOverlaps
8.9 years ago by User 7754 ▴ 270
4
votes
2
replies
3.6k
views
bedtools intersectBed and GRanges countOverlaps
R bed bedtools GenomicRanges
updated 8.9 years ago by 36k • written 8.9 years ago by ▴ 270
0
votes
0
replies
2.7k
views
Software to run genetic association analysis between a phenotype and SNPs, conditional on the top SNP
association SNP phenotype conditional analysis
8.9 years ago by User 7754 ▴ 270
1
vote
5
replies
4.3k
views
P-value for enrichment of ChIP-Seq peaks within a genomic annotation
ChIP-Seq
updated 2.5 years ago by 44k • written 9.3 years ago by ▴ 270
1
vote
0
replies
5.6k
views
Comment: C: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
9.4 years ago by User 7754 ▴ 270
0
votes
0
replies
3.9k
views
Comment: Comment: [SOLVED] Trying to apply overlap to each row of a "GRangesList"
updated 2.4 years ago by 44k • written 9.4 years ago by ▴ 270
0
votes
1
reply
4.4k
views
Circos or circlize plot for overlapping values/colors
circos circlize
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 270
2
votes
6
replies
2.8k
views
bedop: output overlap for each region in a file
overlap BEDOP
updated 2.4 years ago by 44k • written 9.4 years ago by ▴ 270
0
votes
1
reply
2.8k
views
Comment: Comment: bedop: output overlap for each region in a file
updated 2.4 years ago by 44k • written 9.4 years ago by ▴ 270
1
vote
0
replies
2.3k
views
Definition of splicing eQTLs in RNA-Seq and arrays
genome RNA-Seq snp
updated 2.0 years ago by 44k • written 9.8 years ago by ▴ 270
0
votes
0
replies
3.5k
views
Comment: Comment: Quality control filter by genotype counts in a GWAS?
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 270
0
votes
1
reply
3.5k
views
Comment: C: Quality control filter by genotype counts in a GWAS?
9.9 years ago by User 7754 ▴ 270
2
votes
6
replies
3.5k
views
Quality control filter by genotype counts in a GWAS?
filter gwas
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 270
0
votes
0
replies
3.5k
views
Comment: Comment: Quality control filter by genotype counts in a GWAS?
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 270
0
votes
0
replies
2.4k
views
Tools for alternative splicing of distant genes
SNP RNA-Seq alternative-splicing
updated 2.9 years ago by 44k • written 10.1 years ago by ▴ 270
0
votes
0
replies
5.0k
views
Comment: Comment: From vcf 1000 Genomes plink readable file: is there a way to convert it all (not
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 270
0
votes
1
reply
5.0k
views
Comment: Comment: From vcf 1000 Genomes plink readable file: is there a way to convert it all (not
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 270
5
votes
4
replies
5.0k
views
From vcf 1000 Genomes plink readable file: is there a way to convert it all (not only one region)?
vcf plink 1000Genomes
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 270
0
votes
0
replies
4.4k
views
Comment: Comment: Circos or circlize plot for overlapping values/colors
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 270
0
votes
1
reply
3.4k
views
Expression Quantitative Trait Loci Analysis Using Rpkm In R
eqtl rpkm qc
11.0 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
1
reply
12k
views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
12.6 years ago by User 7754 ▴ 270
0
votes
4
replies
3.1k
views
Combined Association Of Expression, Genetic, Clinical Phenotypes
eqtl genetics association
updated 13.4 years ago by 16k • written 13.5 years ago by ▴ 270
3
votes
0
replies
12k
views
Comment: C: Eqtl Database Available?
13.5 years ago by User 7754 ▴ 270
4
votes
8
replies
5.3k
views
Visualise Ld Plots On Whole Chromosome
linkage mapping next-gen sequencing
updated 13.6 years ago by • 0 • written 13.6 years ago by ▴ 270
0
votes
0
replies
5.3k
views
Comment: C: Visualise Ld Plots On Whole Chromosome
13.6 years ago by User 7754 ▴ 270
0
votes
0
replies
5.3k
views
Comment: C: Visualise Ld Plots On Whole Chromosome
13.6 years ago by User 7754 ▴ 270
0
votes
0
replies
5.3k
views
Comment: C: Visualise Ld Plots On Whole Chromosome
13.6 years ago by User 7754 ▴ 270
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