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0
votes
2
replies
511
views
Converting genome build from hg38 to hg19 using liftOver via bigsnpr - error fetching file
snp
bigsnpr
liftover
r
updated 10 weeks ago by
kaaz
• 0 • written 3 months ago by
dam4l
▴ 200
0
votes
0
replies
515
views
Convert alleles from Illumina 1/2 format to ACGT format?
array
plink
allele
illumina
snp
16 months ago by
dam4l
▴ 200
0
votes
1
reply
1.6k
views
Comment:
Comment: Discrepancy between genotype and reference genome build - issue with strand flip
2.1 years ago by
dam4l
▴ 200
0
votes
3
replies
1.6k
views
Discrepancy between genotype and reference genome build - issue with strand flips
minimac4
strandflip
imputation
updated 2.1 years ago by
Nicolas Rosewick
11k • written 2.1 years ago by
dam4l
▴ 200
0
votes
1
reply
31k
views
Comment:
C: Converting SNP from chr:pos to rs number using PLINK?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
dam4l
▴ 200
0
votes
1
reply
31k
views
Comment:
C: Converting SNP from chr:pos to rs number using PLINK?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
dam4l
▴ 200
1
vote
1
reply
2.3k
views
Extract genotype at single locus for all individuals in a PLINK binary ped file?
SNP
plink
5.8 years ago by
dam4l
▴ 200
6
votes
8
replies
11k
views
7 follow
Converting SNP names from Illumina GSA array to rsID using PLINK
SNP
plink
7.1 years ago by
dam4l
▴ 200
0
votes
0
replies
2.9k
views
Comment:
C: Polygenic risk scoring using PRSice: Error in file(file, "rt") : cannot open the
7.3 years ago by
dam4l
▴ 200
0
votes
0
replies
2.9k
views
Comment:
C: Polygenic risk scoring using PRSice: Error in file(file, "rt") : cannot open the
7.3 years ago by
dam4l
▴ 200
0
votes
4
replies
2.9k
views
Polygenic risk scoring using PRSice: Error in file(file, "rt") : cannot open the connection
SNP
R
prsice
updated 7.3 years ago by
bigfoot
▴ 10 • written 7.5 years ago by
dam4l
▴ 200
3
votes
2
replies
3.1k
views
Unknown error message in PLINK association analysis
plink
SNP
gwas
updated 8.0 years ago by
logands
▴ 20 • written 8.7 years ago by
dam4l
▴ 200
0
votes
1
reply
4.6k
views
Calculate genomic inflation factor lambda for meta-analysis run in PLINK?
plink
SNP
gwas
GWAMA
8.0 years ago by
dam4l
▴ 200
0
votes
0
replies
9.0k
views
Comment:
C: Plot minor allele frequency distribution in R?
8.5 years ago by
dam4l
▴ 200
2
votes
2
replies
9.0k
views
Plot minor allele frequency distribution in R?
gwas
maf
R
8.5 years ago by
dam4l
▴ 200
0
votes
1
reply
6.1k
views
PLINK linear regression unwarranted error message?
plink
gwas
regression
updated 8.5 years ago by
chrchang523
11k • written 8.5 years ago by
dam4l
▴ 200
0
votes
1
reply
2.1k
views
Comment:
C: Normalize leptokurtic quantitative outcome measure in R?
8.6 years ago by
dam4l
▴ 200
1
vote
3
replies
2.1k
views
Normalize leptokurtic quantitative outcome measure in R?
r
gwas
SNP
8.6 years ago by
dam4l
▴ 200
0
votes
0
replies
3.8k
views
Comment:
C: Pre-compiled Eigensoft package for Ubuntu?
8.6 years ago by
dam4l
▴ 200
1
vote
2
replies
3.8k
views
Pre-compiled Eigensoft package for Ubuntu?
snp
eigenstrat
ubuntu
pca
8.6 years ago by
dam4l
▴ 200
1
vote
4
replies
4.0k
views
Removing SNPs from .bed file?
SNP
updated 8.7 years ago by
Joey
▴ 430 • written 8.7 years ago by
dam4l
▴ 200
0
votes
1
reply
4.0k
views
Comment:
C: Removing SNPs from .bed file?
8.7 years ago by
dam4l
▴ 200
3
votes
2
replies
7.2k
views
PLINK Principal Components not adequately controlling for population stratification in linear regression?
plink
SNP
gwas
pca
population stratification
updated 8.7 years ago by
andrew.j.skelton73
6.6k • written 8.7 years ago by
dam4l
▴ 200
20
votes
15
replies
31k
views
8 follow
Converting SNP from chr:pos to rs number using PLINK?
plink
SNP
updated 2.3 years ago by
Ram
44k • written 8.9 years ago by
dam4l
▴ 200
1
vote
4
replies
9.6k
views
PLINK --update-name command error due to multiple SNPs with same chr:pos but different rs numbers in reference dataset
PLINK
SNP
updated 2.2 years ago by
Fazil
• 0 • written 8.9 years ago by
dam4l
▴ 200
0
votes
0
replies
31k
views
Comment:
C: Converting SNP from chr:pos to rs number using PLINK?
8.9 years ago by
dam4l
▴ 200
0
votes
0
replies
31k
views
Comment:
C: Converting SNP from chr:pos to rs number using PLINK?
8.9 years ago by
dam4l
▴ 200
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