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Comment: Comment: Can index hopping lead to more reads in samples?
7 months ago by Assa Yeroslaviz ★ 1.9k
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1.2k
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Comment: Comment: Can index hopping lead to more reads in samples?
7 months ago by Assa Yeroslaviz ★ 1.9k
0
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1.2k
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Comment: Comment: Can index hopping lead to more reads in samples?
7 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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1.2k
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Comment: Comment: Can index hopping lead to more reads in samples?
7 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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1.2k
views
Comment: Comment: Can index hopping lead to more reads in samples?
7 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
9
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1.2k
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Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
7 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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351
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What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
7 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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457
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Comment: Comment: annotating single-cell clusters from gene lists
8 months ago by Assa Yeroslaviz ★ 1.9k
0
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2
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457
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annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 8 months ago by 44k • written 8 months ago by ★ 1.9k
0
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0
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219
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Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
9 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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348
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Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
10 months ago by Assa Yeroslaviz ★ 1.9k
3
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4
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771
views
split sequences into their codons in a table
R fasta codon-table
10 months ago by Assa Yeroslaviz ★ 1.9k
1
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0
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771
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Answer: Answer: split sequences into their codons in a table
10 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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245
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cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
10 months ago by Assa Yeroslaviz ★ 1.9k
1
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1
reply
459
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 10 months ago by 13k • written 10 months ago by ★ 1.9k
1
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8
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2.0k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 11 months ago by 85k • written 16 months ago by ★ 1.9k
0
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0
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362
views
extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
11 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
863
views
Comment: Comment: Plotting gene Expression per pathway
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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863
views
Comment: Comment: Plotting gene Expression per pathway
13 months ago by Assa Yeroslaviz ★ 1.9k
1
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4
replies
863
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
13 months ago by Assa Yeroslaviz ★ 1.9k
3
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6
replies
1.2k
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 14 months ago by 44k • written 14 months ago by ★ 1.9k
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1
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1.2k
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Comment: Comment: summarize consecutive columns over a data frame
14 months ago by Assa Yeroslaviz ★ 1.9k
1
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3
replies
1000
views
trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 14 months ago by ★ 18k • written 14 months ago by ★ 1.9k
0
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1
reply
1000
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Comment: Comment: trajectory-like graph for a data frame
14 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
2.0k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
2.0k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
776
views
Comment: Comment: WGS sequencing data based proteomics analysis
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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4
replies
776
views
WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 16 months ago by ★ 1.3k • written 16 months ago by ★ 1.9k
1
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1
reply
7.2k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
7.2k
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Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
7.2k
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Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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521
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Comment: Comment: Checking significance in trend of time-series analysis for count data
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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2
replies
521
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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1.1k
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
17 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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1.1k
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
17 months ago by Assa Yeroslaviz ★ 1.9k
1
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5
replies
1.1k
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 17 months ago by ★ 1.6k • written 17 months ago by ★ 1.9k
2
votes
2
replies
1.3k
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 11 months ago by ▴ 230 • written 17 months ago by ★ 1.9k
0
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1
reply
1.7k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 17 months ago by 13k • written 17 months ago by ★ 1.9k
5
votes
2
replies
871
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 18 months ago by 85k • written 18 months ago by ★ 1.9k
9
votes
5
replies
2.7k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 19 months ago by 147k • written 3.4 years ago by ★ 1.9k
1
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1
reply
573
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
19 months ago by Assa Yeroslaviz ★ 1.9k
1
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0
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573
views
Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
19 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
451
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 17 months ago by 44k • written 19 months ago by ★ 1.9k
0
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1
reply
4.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
20 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
4.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
20 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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4.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
20 months ago by Assa Yeroslaviz ★ 1.9k
0
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2
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4.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
20 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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4.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
21 months ago by Assa Yeroslaviz ★ 1.9k
10
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17
replies
4.3k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell smart-seq
updated 20 months ago by ★ 6.9k • written 21 months ago by ★ 1.9k
0
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0
replies
4.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
21 months ago by Assa Yeroslaviz ★ 1.9k
607 results • Page 2 of 13
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