Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
5
votes
12
replies
1.9k
views
UMI-Tools knee-method has great influence on the results of white list
single-cell whitelist UMI RNA UMI-Tools
updated 10 months ago by 21k • written 10 months ago by ★ 1.9k
0
votes
3
replies
536
views
trying to count a pattern in my fastq file using bbduk
java bbduk bbmap fastq
updated 10 months ago by 150k • written 10 months ago by ★ 1.9k
0
votes
0
replies
1.8k
views
Comment: Comment: why renaming Idents in Seurat object doesn't work?
11 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
3
replies
1.8k
views
why renaming Idents in Seurat object doesn't work?
Seurat RenameIdents R
11 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
1.8k
views
Answer: Answer: why renaming Idents in Seurat object doesn't work?
updated 11 months ago by 45k • written 11 months ago by ★ 1.9k
0
votes
0
replies
1.7k
views
Comment: Comment: Can index hopping lead to more reads in samples?
12 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
1.7k
views
Comment: Comment: Can index hopping lead to more reads in samples?
12 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
1.7k
views
Comment: Comment: Can index hopping lead to more reads in samples?
12 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
1.7k
views
Comment: Comment: Can index hopping lead to more reads in samples?
12 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
1.7k
views
Comment: Comment: Can index hopping lead to more reads in samples?
12 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
9
replies
1.7k
views
Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
12 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
432
views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
12 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
584
views
Comment: Comment: annotating single-cell clusters from gene lists
13 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
replies
584
views
annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 13 months ago by 45k • written 13 months ago by ★ 1.9k
0
votes
0
replies
280
views
Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
14 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
470
views
Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
14 months ago by Assa Yeroslaviz ★ 1.9k
3
votes
4
replies
995
views
split sequences into their codons in a table
R fasta codon-table
14 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
0
replies
995
views
Answer: Answer: split sequences into their codons in a table
14 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
321
views
cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
14 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
1
reply
614
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 14 months ago by 13k • written 14 months ago by ★ 1.9k
1
vote
8
replies
2.3k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 15 months ago by 87k • written 20 months ago by ★ 1.9k
0
votes
0
replies
489
views
extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
16 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
1.1k
views
Comment: Comment: Plotting gene Expression per pathway
17 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
1.1k
views
Comment: Comment: Plotting gene Expression per pathway
17 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
4
replies
1.1k
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
17 months ago by Assa Yeroslaviz ★ 1.9k
3
votes
6
replies
1.5k
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 18 months ago by 45k • written 18 months ago by ★ 1.9k
0
votes
1
reply
1.5k
views
Comment: Comment: summarize consecutive columns over a data frame
18 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
3
replies
1.2k
views
trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 18 months ago by ★ 18k • written 18 months ago by ★ 1.9k
0
votes
1
reply
1.2k
views
Comment: Comment: trajectory-like graph for a data frame
18 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
2.3k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
20 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
2.3k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
20 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
952
views
Comment: Comment: WGS sequencing data based proteomics analysis
20 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
4
replies
952
views
WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 20 months ago by ★ 1.3k • written 20 months ago by ★ 1.9k
1
vote
1
reply
7.6k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
20 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
7.6k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
20 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
7.6k
views
Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
20 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
614
views
Comment: Comment: Checking significance in trend of time-series analysis for count data
21 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
replies
614
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
21 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
1.4k
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
21 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
1.4k
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
21 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
5
replies
1.4k
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 21 months ago by ★ 1.6k • written 21 months ago by ★ 1.9k
2
votes
2
replies
1.7k
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 16 months ago by ▴ 250 • written 21 months ago by ★ 1.9k
0
votes
1
reply
2.1k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 22 months ago by 13k • written 22 months ago by ★ 1.9k
5
votes
2
replies
1.1k
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 23 months ago by 87k • written 23 months ago by ★ 1.9k
9
votes
5
replies
3.0k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 23 months ago by 150k • written 3.8 years ago by ★ 1.9k
1
vote
1
reply
674
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
23 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
0
replies
674
views
Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
23 months ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
524
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 21 months ago by 45k • written 24 months ago by ★ 1.9k
0
votes
1
reply
5.5k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.1 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
5.5k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.1 years ago by Assa Yeroslaviz ★ 1.9k
612 results • Page 2 of 13
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6