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4.3k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
21 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
500
views
bamComparing ChIp-Seq samples with strange coverage between chipped and Input
normalization bamCompare deepTools
updated 17 months ago by 44k • written 21 months ago by ★ 1.9k
4
votes
4
replies
4.1k
views
STAR aligner can't map too short reads
ribo-seq star
updated 22 months ago by 20k • written 22 months ago by ★ 1.9k
1
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1
reply
1.2k
views
Comment: Comment: How to calculate the offset for a riboseq experiment
23 months ago by Assa Yeroslaviz ★ 1.9k
4
votes
3
replies
1.2k
views
How to calculate the offset for a riboseq experiment
sequencing p-site riboseq offset
updated 23 months ago by ▴ 410 • written 24 months ago by ★ 1.9k
0
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0
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1.6k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
24 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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1.6k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
24 months ago by Assa Yeroslaviz ★ 1.9k
5
votes
4
replies
1.6k
views
How to interpret the nine-square plot from mageckFlute
mageck mageckFlute squareView scatterplot
24 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.1k
views
Comment: Comment: Need help understanding GEO data structure
2.0 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.1k
views
Comment: Comment: Need help understanding GEO data structure
2.0 years ago by Assa Yeroslaviz ★ 1.9k
1
vote
5
replies
1.1k
views
Need help understanding GEO data structure
Run-Selector GEO gene-expression-omnibus
updated 2.0 years ago by 147k • written 2.0 years ago by ★ 1.9k
4
votes
2
replies
733
views
How to extract min and max values of a gene from different columns
group_by tibble tidyverse
updated 2.1 years ago by 15k • written 2.1 years ago by ★ 1.9k
0
votes
0
replies
670
views
Comment: Comment: expanding a table by duplicating rows of a specific pattern
2.1 years ago by Assa Yeroslaviz ★ 1.9k
3
votes
2
replies
670
views
expanding a table by duplicating rows of a specific pattern
tidyyverse dplyr R data.frame
2.1 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
4.5k
views
Comment: Comment: Dealing with nanopore fast5 files compressed with vbz
2.2 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
746
views
Comment: Comment: Identifying binding sequences of a specific protein to its target
2.3 years ago by Assa Yeroslaviz ★ 1.9k
2
votes
3
replies
746
views
Identifying binding sequences of a specific protein to its target
transcription-factor-binding-site gene-regulation transcription-factor
2.3 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
842
views
Comment: Comment: Ca you help me understand the Nanopore fastqc results?
2.5 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
replies
842
views
Ca you help me understand the Nanopore fastqc results?
pycoQC long-read-seq nanopore fastqc
2.5 years ago by Assa Yeroslaviz ★ 1.9k
8
votes
7
replies
3.7k
views
Help me understand the Nanopore fastqc results
long-read-seq nanopore fastqc
updated 2.6 years ago by 101k • written 2.6 years ago by ★ 1.9k
0
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1
reply
3.7k
views
Comment: Comment: Help me understand the Nanopore fastqc results
2.6 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
3.7k
views
Comment: Comment: Help me understand the Nanopore fastqc results
2.6 years ago by Assa Yeroslaviz ★ 1.9k
15
votes
11
replies
9.2k
views
6 follow
filter out fasta File by pattern
pattern fasta awk sed regexp
updated 2.5 years ago by 21k • written 9.7 years ago by ★ 1.9k
0
votes
0
replies
422
views
pQTL analysis
plink GWAS pQTL linkage-disequilibrium
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
493
views
Understanding DEXSeq results
dexseq normalization counts
2.8 years ago by Assa Yeroslaviz ★ 1.9k
3
votes
1
reply
597
views
Basic understanding of Hi-C and interacion (contact-) maps
TADs interactions contact-maps AB-compartments HiC
updated 2.8 years ago by 85k • written 2.8 years ago by ★ 1.9k
1
vote
1
reply
945
views
Hoe do you do differential Splicing using edgeR command diffSpliceDGE?
differential-splicing edger diffSpliceDGE
updated 2.8 years ago by ▴ 120 • written 2.8 years ago by ★ 1.9k
1
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1
reply
1.6k
views
Comment: Comment: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
3.0 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
6.1k
views
Comment: Comment: How do I compare reads between two bam file?
3.1 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
6.1k
views
Comment: Comment: How do I compare reads between two bam file?
3.1 years ago by Assa Yeroslaviz ★ 1.9k
5
votes
5
replies
6.1k
views
How do I compare reads between two bam file?
samtools reads bam compare
updated 3.1 years ago by 164k • written 3.1 years ago by ★ 1.9k
0
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0
replies
12k
views
Comment: Comment: How Find Genes On Specific Positions
3.1 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
2.7k
views
Comment: Comment: DESeq2 model matrix not full rank
3.4 years ago by Assa Yeroslaviz ★ 1.9k
1
vote
0
replies
1.8k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.6 years ago by Assa Yeroslaviz ★ 1.9k
2
votes
1
reply
2.0k
views
Comment: Comment: Failing to run tblastn
3.6 years ago by Assa Yeroslaviz ★ 1.9k
4
votes
4
replies
2.0k
views
Answer: Answer: Failing to run tblastn
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
2.0k
views
Comment: Comment: Failing to run tblastn
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
2.0k
views
Comment: Comment: Failing to run tblastn
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
2.0k
views
Comment: Comment: Failing to run tblastn
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.8k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
50k
views
Comment: Comment: Bam File: Change Chromosome Notation
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
550
views
comparing distinct peaks from riboseq profiling results
ribosomal-profiling ribo-seq peaks
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
50k
views
Comment: Comment: Bam File: Change Chromosome Notation
3.6 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
927
views
adjust size of png images in a rasterGrob object
rasterGrob PNG Rmarkdown layout
3.7 years ago by Assa Yeroslaviz ★ 1.9k
2
votes
1
reply
844
views
Mapping after WGS show a parabel form
WGS mapping SNP CNV
updated 3.6 years ago by ▴ 10 • written 3.7 years ago by ★ 1.9k
0
votes
0
replies
903
views
Comment: C: Modifying an annotation files after transgene insertion
3.7 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
replies
903
views
Modifying an annotation files after transgene insertion
transgene insertion gtf annotation
3.7 years ago by Assa Yeroslaviz ★ 1.9k
1
vote
2
replies
1.5k
views
how many reads are necessary for Ribo-Seq analysis
riboseq ribosome profiling ribo-seq
updated 3.8 years ago by • 0 • written 5.6 years ago by ★ 1.9k
1
vote
0
replies
790
views
How to do a normalization onto mtRNAs
mtRNA normalization rna-seq
updated 4.0 years ago by 20 • written 4.1 years ago by ★ 1.9k
0
votes
0
replies
1.1k
views
Comment: C: How can I annotate multiple blast results?
4.0 years ago by Assa Yeroslaviz ★ 1.9k
607 results • Page 3 of 13
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