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Answer: Answer: How to convert raw Nanopore R9 fast5 files to fastq files ?
10 months ago by Dave Carlson ★ 2.1k
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1
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1.8k
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Comment: Comment: Sbatch slurm job
10 months ago by Dave Carlson ★ 2.1k
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1
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1.1k
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Comment: Comment: Moderate Mapping percentage
10 months ago by Dave Carlson ★ 2.1k
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1
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1.1k
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Comment: Comment: Moderate Mapping percentage
11 months ago by Dave Carlson ★ 2.1k
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515
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Comment: Comment: "N/A" in fgsea result
11 months ago by Dave Carlson ★ 2.1k
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0
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651
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Comment: Comment: Aligning a sequence with multiple sequences in LASTZ
11 months ago by Dave Carlson ★ 2.1k
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1
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546
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Comment: Comment: Big differences between biological replicates makes DESeq2 result 0
11 months ago by Dave Carlson ★ 2.1k
3
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0
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466
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Answer: Answer: Alternatives to Mummer3 for linux?
11 months ago by Dave Carlson ★ 2.1k
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0
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1.8k
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Comment: Comment: BUSCO duplicated
12 months ago by Dave Carlson ★ 2.1k
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2
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1.8k
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Comment: Comment: BUSCO duplicated
12 months ago by Dave Carlson ★ 2.1k
1
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1
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1.8k
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Comment: Comment: BUSCO duplicated
12 months ago by Dave Carlson ★ 2.1k
3
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1
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1.8k
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Answer: Answer: BUSCO duplicated
12 months ago by Dave Carlson ★ 2.1k
2
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0
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1.4k
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Comment: Comment: Adapting nf-core/sarek for Ion Torrent Single-End Data Analysis
12 months ago by Dave Carlson ★ 2.1k
2
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2
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1.4k
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Answer: Answer: Adapting nf-core/sarek for Ion Torrent Single-End Data Analysis
12 months ago by Dave Carlson ★ 2.1k
0
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0
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976
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Comment: Comment: EdgeR cannot be updated. (cannot post in the bioconductor forum)
12 months ago by Dave Carlson ★ 2.1k
1
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1
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976
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Answer: Answer: EdgeR cannot be updated. (cannot post in the bioconductor forum)
12 months ago by Dave Carlson ★ 2.1k
1
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0
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1.9k
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Answer: Answer: Plot genes along scaffolds and sort scaffolds according to their length
12 months ago by Dave Carlson ★ 2.1k
4
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0
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1.9k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
13 months ago by Dave Carlson ★ 2.1k
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0
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1.1k
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Comment: Comment: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early
15 months ago by Dave Carlson ★ 2.1k
1
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0
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860
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Answer: Answer: Cost for the deposition of sequencing data in GEO and SRA
15 months ago by Dave Carlson ★ 2.1k
0
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1
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1.7k
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Comment: Comment: Large number of gaps at the beginning of alignments
16 months ago by Dave Carlson ★ 2.1k
0
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1
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1.0k
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Comment: Comment: 10X scRNA-seq v2 odd fastq format
16 months ago by Dave Carlson ★ 2.1k
2
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0
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920
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Answer: Answer: Best pipeline / resources / tools for whole genome assembly in a haploid organis
16 months ago by Dave Carlson ★ 2.1k
2
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3
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1.0k
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10X scRNA-seq v2 odd fastq format
10x scRNA-Seq
updated 16 months ago by ★ 4.5k • written 16 months ago by ★ 2.1k
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0
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953
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Comment: Comment: BAM file read stats (A/T/C/G/ins/del) for each base position
16 months ago by Dave Carlson ★ 2.1k
4
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1
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953
views
Answer: Answer: BAM file read stats (A/T/C/G/ins/del) for each base position
16 months ago by Dave Carlson ★ 2.1k
1
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0
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454
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Answer: Answer: First genomic coordinate that Nanopore read aligns to
16 months ago by Dave Carlson ★ 2.1k
1
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0
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1.1k
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Comment: Comment: What are the definitions of the BBMerge outinsert table file?
16 months ago by Dave Carlson ★ 2.1k
0
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1
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1.1k
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Comment: Comment: What are the definitions of the BBMerge outinsert table file?
16 months ago by Dave Carlson ★ 2.1k
1
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0
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1.1k
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Comment: Comment: Low mapping percentage
19 months ago by Dave Carlson ★ 2.1k
0
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0
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898
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Comment: Comment: Help with understanding BBduk's behavior
19 months ago by Dave Carlson ★ 2.1k
1
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2
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898
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Help with understanding BBduk's behavior
BBduk kmer
19 months ago by Dave Carlson ★ 2.1k
1
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1
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990
views
Comment: Comment: BBduk log and stats appear to be inconsistent
20 months ago by Dave Carlson ★ 2.1k
4
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3
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990
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BBduk log and stats appear to be inconsistent
bbduk bbmap
updated 20 months ago by 148k • written 20 months ago by ★ 2.1k
0
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0
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1.1k
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Answer: Answer: How much resources does HiCanu need to assemble PacBio sequence
21 months ago by Dave Carlson ★ 2.1k
0
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1
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1.2k
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Comment: Comment: Hoe calculate RPKM from RUVr?
21 months ago by Dave Carlson ★ 2.1k
4
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0
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3.9k
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Answer: Answer: Snakemake vs Nextflow Upcoming bioinformatics Project
21 months ago by Dave Carlson ★ 2.1k
0
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0
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841
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Answer: Answer: Journey from gene id to gene sequence
22 months ago by Dave Carlson ★ 2.1k
2
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0
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1.4k
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Comment: Comment: What is the importance of partitions in phylogenomics analysis ?
23 months ago by Dave Carlson ★ 2.1k
1
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1
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1.2k
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Comment: Comment: Use an annotated transcript in STAR but no .gtf file available
23 months ago by Dave Carlson ★ 2.1k
2
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1
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1.2k
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Answer: Answer: Use an annotated transcript in STAR but no .gtf file available
23 months ago by Dave Carlson ★ 2.1k
2
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1
reply
1.7k
views
Comment: Comment: How can I check if an RNA-Seq data is stranded (strand-specific) or not?
2.0 years ago by Dave Carlson ★ 2.1k
1
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0
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682
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Answer: Answer: Structure: not found
2.1 years ago by Dave Carlson ★ 2.1k
1
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0
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1.3k
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Comment: Comment: runing R script on VCF dile in ubuntu
2.1 years ago by Dave Carlson ★ 2.1k
1
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1
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2.4k
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Answer: Answer: AlphaFold 2 alternatives
2.1 years ago by Dave Carlson ★ 2.1k
2
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0
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1.7k
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Comment: Comment: fastqc - typical for Illumina seq?
2.1 years ago by Dave Carlson ★ 2.1k
2
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0
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644
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Answer: Answer: Quickly examining many MSAs
2.1 years ago by Dave Carlson ★ 2.1k
0
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1
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2.0k
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Answer: Answer: How to extract the GT from a given sample in a multisample VCF with cyvcf2?
2.1 years ago by Dave Carlson ★ 2.1k
0
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0
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1.4k
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Comment: Comment: Multiple-way Reciprocal Best BLAST Hits
2.1 years ago by Dave Carlson ★ 2.1k
0
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1
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1.2k
views
Comment: Comment: Does missing data(?) have a significant impact on phylogenetic studies?
2.2 years ago by Dave Carlson ★ 2.1k
217 results • Page 2 of 5
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