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5
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10
replies
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How to get percent identity from bam file ?
bwa bam samtools
updated 2.4 years ago by 7.1k • written 6.9 years ago by ▴ 240
0
votes
1
reply
1.6k
views
Comment: C: Assembly plasmid with tandem repeats of the same insert
4.4 years ago by David ▴ 240
1
vote
1
reply
1.6k
views
Comment: C: Assembly plasmid with tandem repeats of the same insert
4.4 years ago by David ▴ 240
2
votes
5
replies
1.6k
views
Assembly plasmid with tandem repeats of the same insert
assembly sequencing
updated 4.4 years ago by ▴ 540 • written 4.4 years ago by ▴ 240
0
votes
1
reply
618
views
Deseq2 with continous variable
deseq2
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 240
1
vote
8
replies
1.7k
views
Remove fungi from human genome assemblies
minimap dnaseq
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 240
0
votes
0
replies
1.7k
views
Comment: A: Remove fungi from human genome assemblies
4.9 years ago by David ▴ 240
0
votes
1
reply
1.7k
views
Comment: C: Remove fungi from human genome assemblies
4.9 years ago by David ▴ 240
0
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1
reply
1.7k
views
Comment: C: Remove fungi from human genome assemblies
4.9 years ago by David ▴ 240
0
votes
1
reply
1.7k
views
Comment: C: Remove fungi from human genome assemblies
5.0 years ago by David ▴ 240
1
vote
8
replies
4.6k
views
Normalization methods for metagenomics WGS data (not 16S data)
deseq2 edgeR normalization
updated 5.2 years ago by ▴ 40 • written 7.8 years ago by ▴ 240
1
vote
1
reply
4.3k
views
Answer: A: mummer dot plot
5.4 years ago by David ▴ 240
1
vote
7
replies
4.3k
views
mummer dot plot
mummer dotplot
5.4 years ago by David ▴ 240
0
votes
1
reply
4.3k
views
Answer: A: mummer dot plot
5.4 years ago by David ▴ 240
0
votes
0
replies
1.5k
views
Comment: C: What is the symmetric identity percent
5.8 years ago by David ▴ 240
0
votes
2
replies
1.5k
views
What is the symmetric identity percent
identity genome
5.8 years ago by David ▴ 240
5
votes
8
replies
7.4k
views
Relative abundance fro metagenomics samples
metagenomics bwa taxonomy relative abundance
updated 6.0 years ago by ▴ 160 • written 8.1 years ago by ▴ 240
0
votes
0
replies
1.2k
views
Pathway enrichment analysis bacterial genome
R kegg clusterprofiler david metacyc
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 240
0
votes
1
reply
1.8k
views
Comment: C: haplotypeCaller groups comparison
6.0 years ago by David ▴ 240
0
votes
3
replies
1.8k
views
haplotypeCaller groups comparison
gatk
6.0 years ago by David ▴ 240
1
vote
1
reply
1.1k
views
Answer: A: Identify deletion in multiple bam files compared to the same bacterial reference
updated 6.0 years ago by 44k • written 6.0 years ago by ▴ 240
2
votes
3
replies
1.1k
views
Identify deletion in multiple bam files compared to the same bacterial reference
bedtools bam
6.0 years ago by David ▴ 240
0
votes
0
replies
3.4k
views
Comment: C: IGV alignment explanation
6.1 years ago by David ▴ 240
0
votes
2
replies
3.4k
views
IGV alignment explanation
igv bam
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 240
0
votes
0
replies
2.3k
views
Comment: C: Gene coverage from Bam files
6.1 years ago by David ▴ 240
1
vote
2
replies
2.3k
views
Gene coverage from Bam files
bedtools
updated 6.1 years ago by 16k • written 6.1 years ago by ▴ 240
0
votes
0
replies
7.4k
views
Comment: C: Relative abundance fro metagenomics samples
6.1 years ago by David ▴ 240
0
votes
0
replies
1.4k
views
Answer: A: Compare samples from bacterial genome
6.2 years ago by David ▴ 240
2
votes
5
replies
1.4k
views
Compare samples from bacterial genome
deseq metagenomics
6.2 years ago by David ▴ 240
0
votes
1
reply
1.4k
views
Comment: C: Compare samples from bacterial genome
6.2 years ago by David ▴ 240
0
votes
1
reply
6.3k
views
Comment: C: Featurecounts normalize by gene length
6.2 years ago by David ▴ 240
0
votes
1
reply
6.3k
views
Comment: C: Featurecounts normalize by gene length
6.2 years ago by David ▴ 240
3
votes
5
replies
6.3k
views
Featurecounts normalize by gene length
featureCount tpm deseq2
6.2 years ago by David ▴ 240
0
votes
1
reply
1.6k
views
Comment: C: bedcoverage output while looking for missing genes
6.8 years ago by David ▴ 240
1
vote
3
replies
1.6k
views
bedcoverage output while looking for missing genes
bedtools
updated 6.8 years ago by 89k • written 6.8 years ago by ▴ 240
3
votes
4
replies
4.3k
views
Get length of the alignment from bam file
bam
updated 6.9 years ago by 165k • written 6.9 years ago by ▴ 240
0
votes
0
replies
4.3k
views
Comment: C: Get length of the alignment from bam file
6.9 years ago by David ▴ 240
0
votes
0
replies
7.0k
views
Comment: C: How to get percent identity from bam file ?
6.9 years ago by David ▴ 240
0
votes
1
reply
7.0k
views
Comment: C: How to get percent identity from bam file ?
6.9 years ago by David ▴ 240
0
votes
2
replies
7.0k
views
Comment: A: How to get percent identity from bam file ?
6.9 years ago by David ▴ 240
0
votes
0
replies
2.3k
views
Comment: C: Cannot align reads to plasmid
7.0 years ago by David ▴ 240
0
votes
3
replies
2.3k
views
Cannot align reads to plasmid
sequencing bwa
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 240
0
votes
1
reply
2.1k
views
Comment: A: Insert size on PE 2*250
7.0 years ago by David ▴ 240
0
votes
3
replies
2.1k
views
Insert size on PE 2*250
sequencing
7.0 years ago by David ▴ 240
0
votes
1
reply
1.5k
views
slurm and CfnCluster auto-scaling
sequence alignment
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 240
3
votes
12
replies
2.8k
views
How to reduce cross mapping alignments with paired-end reads ?
bwa genome dnaseq
7.4 years ago by David ▴ 240
0
votes
1
reply
2.8k
views
Comment: C: How to reduce false positive whan aligning paired-end reads ?
7.4 years ago by David ▴ 240
0
votes
1
reply
2.8k
views
Answer: A: How to reduce false positive whan aligning paired-end reads ?
7.4 years ago by David ▴ 240
1
vote
1
reply
2.8k
views
Comment: C: How to reduce false positive whan aligning paired-end reads ?
7.4 years ago by David ▴ 240
0
votes
0
replies
2.8k
views
Comment: C: How to reduce false positive whan aligning paired-end reads ?
7.4 years ago by David ▴ 240
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