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Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
7.2 years ago by Satyajeet Khare ★ 1.6k
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1
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2.9k
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Answer: C: ChIP-nexus peak call
7.2 years ago by Satyajeet Khare ★ 1.6k
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0
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Satyajeet Khare ★ 1.6k
3
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1
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Satyajeet Khare ★ 1.6k
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0
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1.2k
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Comment: C: chipseq identification of enrichment of preselected genes
7.2 years ago by Satyajeet Khare ★ 1.6k
1
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1
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2.4k
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Answer: A: Creation of Transcript expression file
7.3 years ago by Satyajeet Khare ★ 1.6k
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0
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2.8k
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Comment: C: Optimization of RNA-Seq data mapping with tophat2
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.8k
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Comment: C: Optimization of RNA-Seq data mapping with tophat2
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
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2.8k
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Answer: A: Optimization of RNA-Seq data mapping with tophat2
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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0
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5.8k
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Comment: C: Regarding getting gene count tables for DeSeq from StringTie using prepDE.py
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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5.8k
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Answer: A: Regarding getting gene count tables for DeSeq from StringTie using prepDE.py
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.3k
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Answer: A: Cuffdiff contrast run error: "Malformed record in sample sheet" and "cuffdiff re
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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6.3k
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Comment: C: DMRcate results: How to find out which CpG sites constitute each DMR
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.6k
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Comment: C: No differential gene expression after tuxedo protocol
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.6k
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Comment: C: No differential gene expression after tuxedo protocol
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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0
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2.5k
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Comment: C: Differences in FPKM values for same sample in multiple comparisons
7.3 years ago by Satyajeet Khare ★ 1.6k
3
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1
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2.3k
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Answer: A: No XIST in Emsembl cdna.fa
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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0
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3.2k
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Answer: A: Presenting differential expression data containing infinite log2(Fold Change)s
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
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2.1k
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Comment: C: hisat2 run gave 0% alignment
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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2
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3.1k
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Comment: C: readcufflinks shows error in R cummeRbund Package
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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3
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3.1k
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Comment: C: readcufflinks shows error in R cummeRbund Package
7.3 years ago by Satyajeet Khare ★ 1.6k
2
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1
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2.5k
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Answer: A: Differences in FPKM values for same sample in multiple comparisons
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
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3.1k
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Answer: A: readcufflinks shows error in R cummeRbund Package
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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3.1k
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Comment: C: readcufflinks shows error in R cummeRbund Package
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.5k
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Comment: C: Differences in FPKM values for same sample in multiple comparisons
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
reply
2.1k
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Answer: A: hisat2 run gave 0% alignment
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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1.7k
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Comment: C: DE analysis with two samples in multiple samples
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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1
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1.7k
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Comment: C: DE analysis with two samples in multiple samples
7.3 years ago by Satyajeet Khare ★ 1.6k
2
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5
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1.7k
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DE analysis with two samples in multiple samples
EdgeR RNA-Seq
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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0
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2.5k
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Answer: A: miRNA IDENTIFICATION from RNA seq DATA
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
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1.8k
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Answer: C: Pipeline for analysing RNA-seq exon level data with lot of samples?
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
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5.1k
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Comment: C: featuresCount order sam file?
7.3 years ago by Satyajeet Khare ★ 1.6k
1
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1
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2.5k
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Answer: A: RNA-Seq : merged.gtf file from cuffmerge where exons are duplicated (two exons w
7.3 years ago by Satyajeet Khare ★ 1.6k
0
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0
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1.6k
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Comment: C: Cuffdiff output file gene_exp.diff has "no" for all listed genes under "signific
7.4 years ago by Satyajeet Khare ★ 1.6k
0
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0
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2.9k
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Answer: A: [Cuffdiff] Differentially Expressed Genes and Transcript Analyses
7.6 years ago by Satyajeet Khare ★ 1.6k
1
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0
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8.2k
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Comment: C: What is first publication/mention of term RNA-seq
7.6 years ago by Satyajeet Khare ★ 1.6k
0
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1
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3.0k
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Replace XLOC id with gene symbol in FPKMmatrix function
RNA-Seq R
updated 7.8 years ago by 20 • written 8.4 years ago by ★ 1.6k
0
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0
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7.4k
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Comment: C: TCONS lincRNA ID to ensembl gene ID conversion
7.8 years ago by Satyajeet Khare ★ 1.6k
0
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0
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2.8k
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Comment: C: Ion Torrent Proton RNASeq reads alignment
7.9 years ago by Satyajeet Khare ★ 1.6k
0
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1
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3.7k
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Comment: C: Is it correct cammand for hisat indexing
7.9 years ago by Satyajeet Khare ★ 1.6k
1
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1
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3.7k
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Answer: A: Is it correct cammand for hisat indexing
7.9 years ago by Satyajeet Khare ★ 1.6k
1
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0
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6.8k
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Answer: A: CONVERT GFF TO GTF
7.9 years ago by Satyajeet Khare ★ 1.6k
0
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0
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2.4k
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Comment: C: Differential expression analysis with RNA-Seq samples that vary in depth
7.9 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.4k
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Comment: C: Differential expression analysis with RNA-Seq samples that vary in depth
7.9 years ago by Satyajeet Khare ★ 1.6k
0
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1
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2.4k
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Comment: C: Differential expression analysis with RNA-Seq samples that vary in depth
7.9 years ago by Satyajeet Khare ★ 1.6k
5
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7
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2.4k
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Differential expression analysis with RNA-Seq samples that vary in depth
RNA-Seq Hisat2 Cufflinks Depth of sequencing
updated 7.9 years ago by 104k • written 7.9 years ago by ★ 1.6k
0
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0
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7.6k
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Comment: C: ballgown error: Rows of pData did not seem to be in the same order as the colum
7.9 years ago by Satyajeet Khare ★ 1.6k
0
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0
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1.4k
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Specify samples in cummeRbund
cummeRbund cuffdiff RNA-Seq
7.9 years ago by Satyajeet Khare ★ 1.6k
0
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0
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1.6k
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Cuffmerge error for large number of samples
RNA-Seq cuffmerge cufflinks
7.9 years ago by Satyajeet Khare ★ 1.6k
1
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1
reply
2.5k
views
Comment: C: sra to fastq conversion - paired-end file won't split
8.0 years ago by Satyajeet Khare ★ 1.6k
283 results • Page 3 of 6
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