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Why does bcftools call from different max-depth (-d) value in mpileup give inconstant GT values?
vcf variant-calling bcftools mpileup
updated 17 months ago by 44k • written 22 months ago by ▴ 30
0
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0
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375
views
Which files contain overview information from Monarch Initiative?
monarch initiative
23 months ago by magnolia ▴ 30
0
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0
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829
views
Comment: Comment: How to obtain upstream variant genes?
23 months ago by magnolia ▴ 30
1
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2
replies
829
views
How to obtain upstream variant genes?
snp dbsnp gene variant
23 months ago by magnolia ▴ 30
1
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0
replies
1.4k
views
Comment: Comment: Is possible to run VEP without consequence calculation?
2.1 years ago by magnolia ▴ 30
0
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1
reply
1.4k
views
Comment: Comment: Is possible to run VEP without consequence calculation?
2.1 years ago by magnolia ▴ 30
0
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0
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1.4k
views
Comment: Comment: Is possible to run VEP without consequence calculation?
2.1 years ago by magnolia ▴ 30
0
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1
reply
1.4k
views
Comment: Comment: Is possible to run VEP without consequence calculation?
2.1 years ago by magnolia ▴ 30
4
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8
replies
1.4k
views
Is possible to run VEP without consequence calculation?
vep annotation
2.1 years ago by magnolia ▴ 30
0
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0
replies
571
views
Comment: Comment: Is there a resource on how to create variant annotator from scratch?
2.1 years ago by magnolia ▴ 30
1
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2
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571
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Is there a resource on how to create variant annotator from scratch?
annotation variant
2.1 years ago by magnolia ▴ 30
0
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0
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2.7k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
2.2 years ago by magnolia ▴ 30
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1
reply
2.7k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
2.2 years ago by magnolia ▴ 30
0
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1
reply
2.7k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
2.2 years ago by magnolia ▴ 30
0
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1
reply
2.7k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
2.2 years ago by magnolia ▴ 30
0
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1
reply
2.7k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
2.2 years ago by magnolia ▴ 30
0
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0
replies
470
views
How assign PAR regions to X or Y for an rsID in VCF?
vcf rsid par
2.2 years ago by magnolia ▴ 30
5
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10
replies
2.7k
views
How to change chromosome names in assembly fasta downloaded from NCBI?
grch38 ncbi grch37 fasta
2.2 years ago by magnolia ▴ 30
0
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0
replies
655
views
How to install/run pysam bcftools plugins?
bcftools pysam
updated 17 months ago by 44k • written 2.2 years ago by ▴ 30
0
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0
replies
628
views
Comment: Comment: How variant locations work when there is an INDEL around?
2.3 years ago by magnolia ▴ 30
1
vote
2
replies
628
views
How variant locations work when there is an INDEL around?
snp indel variant
2.3 years ago by magnolia ▴ 30
0
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0
replies
1.1k
views
Comment: Comment: How to insert dbSNP in a database?
2.3 years ago by magnolia ▴ 30
0
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1
reply
1.1k
views
Comment: Comment: How to insert dbSNP in a database?
2.3 years ago by magnolia ▴ 30
1
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4
replies
1.1k
views
How to insert dbSNP in a database?
dbsnp database
2.3 years ago by magnolia ▴ 30
0
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0
replies
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
10
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18
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3.9k
views
How to determine assembly of a VCF?
vcf
updated 2.3 years ago by 4.5k • written 2.3 years ago by ▴ 30
0
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1
reply
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
0
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1
reply
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
0
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0
replies
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
0
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1
reply
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
0
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1
reply
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
0
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0
replies
3.9k
views
Comment: Comment: How to determine assembly of a VCF?
2.3 years ago by magnolia ▴ 30
0
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0
replies
3.7k
views
Comment: Comment: Is there equivalent of bgzip in Python?
2.7 years ago by magnolia ▴ 30
5
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4
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3.7k
views
Is there equivalent of bgzip in Python?
python bgzip
2.7 years ago by magnolia ▴ 30
0
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0
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3.7k
views
Comment: Comment: Is there equivalent of bgzip in Python?
2.7 years ago by magnolia ▴ 30
0
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0
replies
2.1k
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Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.9 years ago by magnolia ▴ 30
0
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0
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2.1k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.9 years ago by magnolia ▴ 30
0
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1
reply
2.1k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.9 years ago by magnolia ▴ 30
0
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2
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2.1k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.9 years ago by magnolia ▴ 30
3
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8
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2.1k
views
Why VCF POS different in dbSNP and ClinVar?
vep clinvar dbsnp vcf
2.9 years ago by magnolia ▴ 30
0
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0
replies
832
views
Comment: Comment: How to parse VCF in Node/Javascript? (equivalent of pyVCF)
3.0 years ago by magnolia ▴ 30
0
votes
2
replies
832
views
How to parse VCF in Node/Javascript? (equivalent of pyVCF)
javascript node vcf
3.0 years ago by magnolia ▴ 30
0
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0
replies
1.4k
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
3.8 years ago by magnolia ▴ 30
5
votes
5
replies
1.8k
views
Why VEP doesn't take strand into account?
vep ensembl snp
updated 3.8 years ago by 24k • written 3.8 years ago by ▴ 30
3
votes
7
replies
1.4k
views
Why VEP annotates non-variants (homozygous reference)?
vep ensembl SNP
updated 3.8 years ago by 24k • written 3.8 years ago by ▴ 30
0
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1
reply
1.4k
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
3.8 years ago by magnolia ▴ 30
0
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1
reply
1.4k
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
3.8 years ago by magnolia ▴ 30
0
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0
replies
1.8k
views
Comment: C: Why VEP doesn't take strand into account?
3.8 years ago by magnolia ▴ 30
0
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1
reply
1.8k
views
Comment: C: Why VEP doesn't take strand into account?
3.8 years ago by magnolia ▴ 30
1
vote
1
reply
989
views
How to get human gene locations via Python?
gene python
4.3 years ago by magnolia ▴ 30
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