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18k
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Answer: A: TMM or TPM normalized counts for visualization?
5.1 years ago by simplitia ▴ 130
1
vote
2
replies
1.7k
views
STAR: Is it ok to align with an index created from genecode but count features from gtf from ensembl?
RNA-Seq STAR alignment
updated 5.1 years ago by ★ 4.1k • written 5.1 years ago by ▴ 130
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0
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604
views
How to interpret exon reads from recount for version 2?
RNA-Seq TCGA
5.3 years ago by simplitia ▴ 130
0
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0
replies
3.0k
views
Answer: A: SOAPfuse: problem in constructing database
5.4 years ago by simplitia ▴ 130
0
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0
replies
992
views
Advice for gene overlap with direction between two sets.
R chisquare statistics
5.6 years ago by simplitia ▴ 130
0
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1
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1.6k
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Comment: C: Understanding FANTOM5 CAGE fields
5.8 years ago by simplitia ▴ 130
2
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3
replies
1.6k
views
Understanding FANTOM5 CAGE fields
RNA-Seq transcription tss
updated 5.8 years ago by ★ 4.1k • written 5.8 years ago by ▴ 130
0
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1
reply
1.6k
views
Help convert GDC exploration url to API download?
gdc mutation portal
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 130
0
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0
replies
191k
views
Comment: A: How to download raw sequence data from GEO/SRA
updated 5.8 years ago by 44k • written 6.8 years ago by ▴ 130
0
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1
reply
144k
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Comment: C: from .BAM to .BAI using samtools
5.9 years ago by simplitia ▴ 130
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0
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4.3k
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Comment: C: How to recreate FASTQ from BAM
6.0 years ago by simplitia ▴ 130
2
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4
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4.3k
views
How to recreate FASTQ from BAM
RNA-Seq BAM sequencing
updated 6.0 years ago by ▴ 310 • written 6.0 years ago by ▴ 130
10
votes
6
replies
4.0k
views
Hard time trying to calculate Allele Frequency and DP from Platypus
RNA-Seq SNV
updated 6.2 years ago by 88k • written 6.9 years ago by ▴ 130
1
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0
replies
11k
views
Comment: C: Converting large (compressed and unsorted) BAM files to fastq
6.4 years ago by simplitia ▴ 130
2
votes
1
reply
1.9k
views
How to deconvolute whole blood and analyzed cell type separately for EWAS
methylation cpg 850K EPIC
updated 6.8 years ago by 88k • written 6.8 years ago by ▴ 130
1
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0
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2.5k
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Comment: C: How to quantify PCR duplication from bam file
6.9 years ago by simplitia ▴ 130
1
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2
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2.5k
views
How to quantify PCR duplication from bam file
RNA-Seq
updated 6.9 years ago by 147k • written 6.9 years ago by ▴ 130
0
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0
replies
4.0k
views
Comment: C: Hard time trying to calculate Allele Frequency and DP from Platypus
6.9 years ago by simplitia ▴ 130
1
vote
1
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4.0k
views
Comment: C: Hard time trying to calculate Allele Frequency and DP from Platypus
updated 6.9 years ago by 88k • written 6.9 years ago by ▴ 130
0
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0
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3.3k
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Comment: C: Help with BWA: how to align paired as single and then combine again
7.0 years ago by simplitia ▴ 130
0
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1
reply
3.3k
views
Comment: C: Help with BWA: how to align paired as single and then combine again
7.0 years ago by simplitia ▴ 130
0
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0
replies
3.3k
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Comment: C: Help with BWA: how to align paired as single and then combine again
7.0 years ago by simplitia ▴ 130
0
votes
1
reply
3.3k
views
Comment: C: Help with BWA: how to align paired as single and then combine again
7.0 years ago by simplitia ▴ 130
0
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8
replies
3.3k
views
Help with BWA: how to align paired as single and then combine again
RNA-Seq alignment bwa
7.0 years ago by simplitia ▴ 130
0
votes
0
replies
1.8k
views
Create fusion transcripts with breakpoint coordinates from two genes.
RNA-Seq sequence
8.7 years ago by simplitia ▴ 130
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