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Comment: Comment: Using salmon on HISAT2 BAM files for transcript quantification
23 months ago by Buffo ★ 2.4k
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1.4k
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Comment: Comment: is there any tool for SRA metadata analysis?
23 months ago by Buffo ★ 2.4k
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1
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1.4k
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Comment: Comment: is there any tool for SRA metadata analysis?
23 months ago by Buffo ★ 2.4k
3
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5
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1.4k
views
is there any tool for SRA metadata analysis?
sratools eutilities sra
updated 23 months ago by ★ 6.9k • written 23 months ago by ★ 2.4k
1
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0
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776
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Answer: Answer: BUSCO, Gene duplication
23 months ago by Buffo ★ 2.4k
0
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0
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958
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Comment: Comment: Different blast results between NR or local genome
23 months ago by Buffo ★ 2.4k
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0
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1.6k
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Answer: Answer: fastqc - typical for Illumina seq?
2.0 years ago by Buffo ★ 2.4k
0
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1
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1.4k
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Comment: Comment: How to combine eggnog and interproscan
2.0 years ago by Buffo ★ 2.4k
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0
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1.4k
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Comment: Comment: Multiple-way Reciprocal Best BLAST Hits
2.0 years ago by Buffo ★ 2.4k
0
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0
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634
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Answer: Answer: smallRNA profiling using HTSeq error
2.0 years ago by Buffo ★ 2.4k
1
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0
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539
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Answer: Answer: Calculating percentage TEs content (%) for a genome
2.0 years ago by Buffo ★ 2.4k
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0
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1.8k
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Comment: Comment: Using Specific Regions of Genome as Reference for Alignment Using STAR
2.0 years ago by Buffo ★ 2.4k
0
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1
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1.8k
views
Answer: Answer: Using Specific Regions of Genome as Reference for Alignment Using STAR
2.0 years ago by Buffo ★ 2.4k
0
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0
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3.1k
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Comment: Comment: Speeding up minimap2
2.0 years ago by Buffo ★ 2.4k
0
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0
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626
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Answer: Answer: Filtering out useful targets for mirna
2.0 years ago by Buffo ★ 2.4k
0
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1
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3.1k
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Comment: Comment: Speeding up minimap2
2.0 years ago by Buffo ★ 2.4k
1
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0
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1.5k
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Answer: Answer: Assessing N50 and L50 while working on Genome assembly
2.0 years ago by Buffo ★ 2.4k
1
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0
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1.5k
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Comment: Comment: Assessing N50 and L50 while working on Genome assembly
2.0 years ago by Buffo ★ 2.4k
0
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0
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801
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Comment: Comment: GenCodeMismatch in .sqn file, is there any solution?
2.2 years ago by Buffo ★ 2.4k
0
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1
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801
views
GenCodeMismatch in .sqn file, is there any solution?
ncbi annotation sqn
2.2 years ago by Buffo ★ 2.4k
1
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0
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1.3k
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Comment: Comment: Comparing reference genome assemblies of two plant varieties
2.3 years ago by Buffo ★ 2.4k
0
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1
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732
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Comment: Comment: QC Hi-C data
2.3 years ago by Buffo ★ 2.4k
0
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1
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959
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Comment: Comment: What is the maximum size of fasta file i can use for repeatmasker?
2.4 years ago by Buffo ★ 2.4k
0
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0
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1.0k
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Comment: Comment: Which miRNA arm to select for target prediction, 3p or 5p?
2.4 years ago by Buffo ★ 2.4k
0
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1
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1.0k
views
Comment: Comment: Which miRNA arm to select for target prediction, 3p or 5p?
2.4 years ago by Buffo ★ 2.4k
0
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1
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1.0k
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Comment: Comment: Which miRNA arm to select for target prediction, 3p or 5p?
2.4 years ago by Buffo ★ 2.4k
0
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1
reply
2.1k
views
Comment: Comment: Using kraken2 to fish out only 16S reads
2.5 years ago by Buffo ★ 2.4k
0
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0
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617
views
Comment: Comment: Tools for comparative analysis of eukaryotic genomic sequences
2.6 years ago by Buffo ★ 2.4k
0
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2
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1.8k
views
Comment: Comment: Convert all fasta files in one folder
2.6 years ago by Buffo ★ 2.4k
0
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0
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625
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Comment: Comment: How do I search for miRNA target seeds using command line mirtarbase?
2.6 years ago by Buffo ★ 2.4k
1
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0
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1.0k
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Comment: Comment: miRNA help
2.7 years ago by Buffo ★ 2.4k
1
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0
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875
views
Answer: Answer: How to filter for evalue threshold in blastx output
2.7 years ago by Buffo ★ 2.4k
0
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0
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1.1k
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Answer: Answer: Per base sequence quality - fastqc
2.8 years ago by Buffo ★ 2.4k
0
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0
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2.4k
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Comment: Comment: How to make hybrid assembly of a viral genome
2.9 years ago by Buffo ★ 2.4k
0
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1
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2.4k
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Comment: Comment: How to make hybrid assembly of a viral genome
2.9 years ago by Buffo ★ 2.4k
0
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1
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2.4k
views
Comment: Comment: How to make hybrid assembly of a viral genome
2.9 years ago by Buffo ★ 2.4k
0
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1
reply
2.4k
views
Comment: Comment: How to make hybrid assembly of a viral genome
2.9 years ago by Buffo ★ 2.4k
0
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1
reply
2.4k
views
Answer: Answer: How to make hybrid assembly of a viral genome
2.9 years ago by Buffo ★ 2.4k
0
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1
reply
1.4k
views
Comment: Comment: Create junctions from Bed file for IGV visualization
3.0 years ago by Buffo ★ 2.4k
1
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3
replies
1.4k
views
Create junctions from Bed file for IGV visualization
junctions bed igv
updated 3.0 years ago by 36k • written 3.0 years ago by ★ 2.4k
0
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0
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24k
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Comment: Comment: Building Snpeff Database
3.0 years ago by Buffo ★ 2.4k
0
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0
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794
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Comment: Comment: RNA-seq: Sequencing data has two coverages
3.1 years ago by Buffo ★ 2.4k
0
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1
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1.1k
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Comment: Comment: exceRpt miRNA pipeline for paired-end RNA-seq data
3.1 years ago by Buffo ★ 2.4k
1
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0
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898
views
Answer: Answer: Circos plot of dominant OTU with phylogenetic tree
3.2 years ago by Buffo ★ 2.4k
1
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0
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2.7k
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Comment: Comment: Which files from PacBio output files to use in downstream analysis in R
3.2 years ago by Buffo ★ 2.4k
0
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1
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1.8k
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Comment: Comment: Is it possible to isolate and merge overlapping hits from a BLAST search Aligned
3.2 years ago by Buffo ★ 2.4k
1
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0
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1.0k
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Comment: Comment: How to add metadata to dendrogram of hierarchical clustering in R
3.2 years ago by Buffo ★ 2.4k
0
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0
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886
views
IPD values from ipdsummary, methylation analysis using PacBio
methylation DNAsequencing IPD m4C m6A
3.2 years ago by Buffo ★ 2.4k
0
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0
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475
views
Splitting predicted transcripts according to ORF coordinates
transcript ORF RNAseq
3.4 years ago by Buffo ★ 2.4k
1
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1
reply
1000
views
Comment: Comment: Heatmap from the coverage
3.5 years ago by Buffo ★ 2.4k
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