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1
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0
replies
171
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What exactly is Biopython's alignment.score variable?
Biopython
3 months ago by Tom ▴ 50
1
vote
1
reply
332
views
Is there a way to calculate percent identity and percent similarity with Bio.Align?
biopython bio.align
updated 3 months ago by 21k • written 3 months ago by ▴ 50
1
vote
3
replies
1.1k
views
Genotypic and clinical phenotypic feature selection methods for machine learning (in python)?
python machine-learning
updated 2.6 years ago by ★ 28k • written 2.6 years ago by ▴ 50
0
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0
replies
548
views
Beagle: Index -l out of bounds for length 2
beagle genotyping
2.7 years ago by Tom ▴ 50
2
votes
5
replies
1.6k
views
Download all peptide sequences from NCBI in fasta format?
biopython
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 50
0
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1
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14k
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Comment: C: A:orthomcl with local mysql server on linux server, complete install
updated 5.0 years ago by 44k • written 8.5 years ago by ▴ 50
0
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1
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1.6k
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Comment: C: Download all peptide sequences from NCBI in fasta format?
5.0 years ago by Tom ▴ 50
0
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1
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1.6k
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Comment: C: Download all peptide sequences from NCBI in fasta format?
5.0 years ago by Tom ▴ 50
2
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1
reply
1.5k
views
How to run PSSPred on multple sequences
psspred peptide sequence
updated 6.6 years ago by 164k • written 6.6 years ago by ▴ 50
0
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0
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2.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.5 years ago by Tom ▴ 50
0
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1
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2.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.5 years ago by Tom ▴ 50
0
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1
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2.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.6 years ago by Tom ▴ 50
0
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1
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2.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.6 years ago by Tom ▴ 50
0
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1
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2.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.6 years ago by Tom ▴ 50
0
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1
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2.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.6 years ago by Tom ▴ 50
0
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1
reply
2.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.6 years ago by Tom ▴ 50
0
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2
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2.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.6 years ago by Tom ▴ 50
7
votes
17
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2.8k
views
Extract Bibliographic Reference from GEO dataset using EFetch?
geo efetch ncbi
updated 7.6 years ago by 5.8k • written 7.6 years ago by ▴ 50
0
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1
reply
2.3k
views
Comment: C: Combining gene expression data into a principal components analysis - how to dea
7.7 years ago by Tom ▴ 50
0
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1
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2.3k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
7.7 years ago by Tom ▴ 50
0
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1
reply
2.3k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
7.7 years ago by Tom ▴ 50
0
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2
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2.3k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
7.7 years ago by Tom ▴ 50
1
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8
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2.3k
views
Combining gene expression data into a principal components analysis - how to deal with missing data?
pca missing data gene expression r
7.7 years ago by Tom ▴ 50
0
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1
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4.2k
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Comment: C: Differential expression using microarray data and limma, where am I going wrong?
7.7 years ago by Tom ▴ 50
4
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5
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4.2k
views
Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray
7.7 years ago by Tom ▴ 50
0
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0
replies
2.9k
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Comment: C: NCBI: Parsing data nicely?
7.8 years ago by Tom ▴ 50
0
votes
0
replies
1.6k
views
Is it possible to use geometadb to extract sample age from a set of samples in GEO?
geo geometadb R
7.8 years ago by Tom ▴ 50
4
votes
4
replies
2.9k
views
NCBI: Parsing data nicely?
parsing data table ncbi geo
updated 7.8 years ago by 11k • written 7.8 years ago by ▴ 50
0
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1
reply
2.9k
views
Comment: C: NCBI: Parsing data nicely?
7.8 years ago by Tom ▴ 50
0
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0
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5.0k
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Comment: C: How to identify one-to-one orthologs in inparanoid in 20 mammalian species
7.8 years ago by Tom ▴ 50
4
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8
replies
5.0k
views
How to identify one-to-one orthologs in inparanoid in 20 mammalian species
inparanoid one-to-one orthologs
updated 7.9 years ago by ▴ 40 • written 8.5 years ago by ▴ 50
0
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0
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36k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
7.9 years ago by Tom ▴ 50
0
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0
replies
5.3k
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Comment: C: Rattus norvegicus Rnor5.0 GTF annotation in GENCODE format ?
7.9 years ago by Tom ▴ 50
0
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0
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13k
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Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
7.9 years ago by Tom ▴ 50
0
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1
reply
36k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
7.9 years ago by Tom ▴ 50
0
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1
reply
36k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
7.9 years ago by Tom ▴ 50
0
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1
reply
36k
views
Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
7.9 years ago by Tom ▴ 50
0
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1
reply
6.3k
views
Comment: C: couting rpkm by edgr package
7.9 years ago by Tom ▴ 50
6
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9
replies
13k
views
Convert read counts to RPKM or TPM values: Numbers don't look right?
gene expression tpm rpkm geo
updated 7.9 years ago by ★ 1.4k • written 7.9 years ago by ▴ 50
0
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1
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13k
views
Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
7.9 years ago by Tom ▴ 50
1
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1
reply
13k
views
Answer: A: Convert read counts to RPKM or TPM values: Numbers don't look right?
7.9 years ago by Tom ▴ 50
0
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0
replies
13k
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Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
7.9 years ago by Tom ▴ 50
0
votes
1
reply
4.1k
views
How to correctly calculate Storey-Tibshriani FDR Q Values using R Package "QValue"?
r fdr python q value p value
7.9 years ago by Tom ▴ 50
2
votes
2
replies
1.4k
views
Randomising gene expression data
randomisation gene expression python
updated 8.0 years ago by 27k • written 8.0 years ago by ▴ 50
0
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0
replies
4.3k
views
Comment: C: How to tell if a gene is over- or under-expressed from the output of F test (dif
8.0 years ago by Tom ▴ 50
0
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1
reply
4.3k
views
Comment: C: How to tell if a gene is over- or under-expressed from the output of F test (dif
8.0 years ago by Tom ▴ 50
0
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0
replies
2.3k
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Comment: C: Obtaining all age related expression data from GEO
8.1 years ago by Tom ▴ 50
0
votes
0
replies
2.3k
views
Comment: C: Obtaining all age related expression data from GEO
8.1 years ago by Tom ▴ 50
1
vote
5
replies
2.3k
views
Obtaining all age related expression data from GEO
geo
updated 8.1 years ago by ★ 4.0k • written 8.1 years ago by ▴ 50
1
vote
18
replies
3.0k
views
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils
8.3 years ago by Tom ▴ 50
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