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Comment: Comment: What metrics to use for comparing alignment-based methods and variant calling fo
2.7 years ago by liorglic ★ 1.4k
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2.1k
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Answer: Answer: What do we call a transcript?
2.8 years ago by liorglic ★ 1.4k
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759
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Comment: Comment: Genotypes in vcf files
2.8 years ago by liorglic ★ 1.4k
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3.0k
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Answer: Answer: FastQC for paired end data
2.8 years ago by liorglic ★ 1.4k
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1.5k
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Comment: Comment: Filter isoforms before or after genome annotation
2.8 years ago by liorglic ★ 1.4k
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1.5k
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Comment: Comment: Plant de novo genome assembly of illumina reads on linux
2.8 years ago by liorglic ★ 1.4k
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1.5k
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Answer: Answer: Plant de novo genome assembly of illumina reads on linux
2.8 years ago by liorglic ★ 1.4k
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1.5k
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Comment: Comment: Filter isoforms before or after genome annotation
2.8 years ago by liorglic ★ 1.4k
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857
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Comment: Comment: Is there any way to determine if a gene is due to contamination?
2.8 years ago by liorglic ★ 1.4k
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5.6k
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Comment: Comment: Trouble with bedtools getfasta
2.8 years ago by liorglic ★ 1.4k
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5.6k
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Comment: Comment: Trouble with bedtools getfasta
2.8 years ago by liorglic ★ 1.4k
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1
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5.6k
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Comment: Comment: Trouble with bedtools getfasta
updated 2.8 years ago by 44k • written 2.8 years ago by ★ 1.4k
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2.0k
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Answer: Answer: Re-assembly assembled genomes
2.8 years ago by liorglic ★ 1.4k
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1.0k
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Comment: Comment: Bam in python
2.8 years ago by liorglic ★ 1.4k
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1
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1.0k
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Answer: Answer: Bam in python
2.8 years ago by liorglic ★ 1.4k
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2
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730
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NGS sequencing depth notation
NGS depth
updated 2.8 years ago by 101k • written 2.8 years ago by ★ 1.4k
3
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1
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1.7k
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Answer: Answer: Using snakemake to download split-reads by SRA number
2.8 years ago by liorglic ★ 1.4k
2
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1
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873
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Answer: Answer: Why should we remove recombinant regions when we construct phylogenetic tree?
2.8 years ago by liorglic ★ 1.4k
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0
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504
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Comment: Comment: Incorporate SNP/Indel and generate new sequence from original reference gene seq
2.8 years ago by liorglic ★ 1.4k
3
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1
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1.1k
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Answer: Answer: Can I execute a snakemake rule only once?
2.8 years ago by liorglic ★ 1.4k
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1
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633
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Comment: Comment: studying similarity
2.8 years ago by liorglic ★ 1.4k
3
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615
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Answer: Answer: SeqIO object get cleared away after being accessed
2.8 years ago by liorglic ★ 1.4k
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0
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1.4k
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Comment: Comment: How can I extract part of the DNA sequences that align to a specific region in t
2.8 years ago by liorglic ★ 1.4k
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1
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1.4k
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Comment: Comment: How is genome coverage / depth is determined?
2.8 years ago by liorglic ★ 1.4k
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1.4k
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Comment: Comment: How is genome coverage / depth is determined?
2.8 years ago by liorglic ★ 1.4k
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0
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3.3k
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Answer: Answer: Fastest way to parse through a fasta file in python
2.8 years ago by liorglic ★ 1.4k
1
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1
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1.6k
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Comment: Comment: Merging two sets of NGS reads
2.8 years ago by liorglic ★ 1.4k
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0
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1.9k
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Comment: Comment: Unsupervised hierarchical clustering of DEG in Rstudio
2.8 years ago by liorglic ★ 1.4k
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0
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929
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Comment: Comment: String values replace in python data frame
2.8 years ago by liorglic ★ 1.4k
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1
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1.6k
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Comment: Comment: Merging two sets of NGS reads
2.8 years ago by liorglic ★ 1.4k
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1
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1.9k
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Comment: Comment: Unsupervised hierarchical clustering of DEG in Rstudio
2.8 years ago by liorglic ★ 1.4k
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0
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606
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Answer: Answer: How to determine the best assembly with number of N in the sequence and how to f
2.8 years ago by liorglic ★ 1.4k
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1
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1.9k
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Comment: Comment: Unsupervised hierarchical clustering of DEG in Rstudio
2.8 years ago by liorglic ★ 1.4k
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0
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1.0k
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Comment: Comment: Iso-seq mapping and annotation
2.8 years ago by liorglic ★ 1.4k
0
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0
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759
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Answer: Answer: Does it necessary to use both forward and reverse fastq input files in kmergnie?
2.8 years ago by liorglic ★ 1.4k
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0
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905
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Answer: Answer: How extract a specific part of sequence from a gtf file?
2.8 years ago by liorglic ★ 1.4k
1
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0
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666
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Answer: Answer: [Beginner] Whole Genome Sequence Assembly: Where do I start?
2.8 years ago by liorglic ★ 1.4k
0
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0
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945
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Comment: Comment: how to discover the dissimilar regions in alignment using pyhton?
2.8 years ago by liorglic ★ 1.4k
1
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0
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994
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Answer: Answer: How to not align reverse complementary reads?
2.8 years ago by liorglic ★ 1.4k
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1
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1.9k
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Comment: Comment: How to solve Non-unique top level ID error in Maker annotation pipeline ?
2.8 years ago by liorglic ★ 1.4k
1
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0
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16k
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Answer: Answer: How to get FASTQ reads from the Short Read Archive (SRA)
2.8 years ago by liorglic ★ 1.4k
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0
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1.1k
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Comment: Comment: Paired-end reads
2.8 years ago by liorglic ★ 1.4k
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3
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1.2k
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Clumpify on multiple files
dedupe clumpify fastq
2.9 years ago by liorglic ★ 1.4k
1
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0
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1.2k
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Answer: Answer: Clumpify on multiple files
2.9 years ago by liorglic ★ 1.4k
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0
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5.0k
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Comment: Comment: It seems that 'fastuniq' does not support fq.gz files. How to solve this except
2.9 years ago by liorglic ★ 1.4k
0
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0
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1.2k
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Comment: Comment: Clumpify on multiple files
2.9 years ago by liorglic ★ 1.4k
2
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1
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1.1k
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Answer: Answer: Do I need to trim the reads on samples with <0.2% adapter content?
2.9 years ago by liorglic ★ 1.4k
0
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1
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1.3k
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Answer: Answer: Read multiple VCF files through PyVCF
2.9 years ago by liorglic ★ 1.4k
0
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1
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921
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Comment: Comment: Data sets of WGS + disease phenotypes?
2.9 years ago by liorglic ★ 1.4k
1
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3
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921
views
Data sets of WGS + disease phenotypes?
wgs phenotype
updated 2.9 years ago by ▴ 190 • written 2.9 years ago by ★ 1.4k
284 results • Page 3 of 6
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