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Comment: C: Combining vcf files so that same loci data is combined
7.0 years ago by spiral01 ▴ 110
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1
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1.7k
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Comment: C: Precedence between alt field and GT info in vcf files
7.0 years ago by spiral01 ▴ 110
2
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3
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1.7k
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Precedence between alt field and GT info in vcf files
SNP
updated 7.0 years ago by ★ 2.9k • written 7.0 years ago by ▴ 110
0
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0
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6.1k
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Comment: C: Quickest way to filter vcf using bed files
7.0 years ago by spiral01 ▴ 110
0
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0
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6.1k
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Comment: C: Quickest way to filter vcf using bed files
7.0 years ago by spiral01 ▴ 110
0
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1
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6.1k
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Comment: C: Quickest way to filter vcf using bed files
7.0 years ago by spiral01 ▴ 110
4
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6
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6.1k
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Quickest way to filter vcf using bed files
SNP
7.0 years ago by spiral01 ▴ 110
0
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0
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2.0k
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Denisovan and Neanderthal vcf files
SNP
7.1 years ago by spiral01 ▴ 110
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0
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1.5k
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Comment: C: Annotating Altai Neanderthal and Denisovan variants
7.1 years ago by spiral01 ▴ 110
0
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1
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2.2k
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Comment: C: Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
7.1 years ago by spiral01 ▴ 110
0
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1
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2.2k
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Comment: C: Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
7.1 years ago by spiral01 ▴ 110
0
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1
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2.2k
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Comment: C: Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
7.1 years ago by spiral01 ▴ 110
0
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1
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2.2k
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Comment: C: Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
7.1 years ago by spiral01 ▴ 110
0
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1
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2.2k
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Comment: C: Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
7.1 years ago by spiral01 ▴ 110
0
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2
replies
2.5k
views
Annovar: Error when downloading dm6 drosophila database
SNP
updated 7.2 years ago by 88k • written 7.2 years ago by ▴ 110
0
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1
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1.5k
views
Annotating Altai Neanderthal and Denisovan variants
SNP
7.2 years ago by spiral01 ▴ 110
0
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1
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3.3k
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Comment: C: Using multiple filters in BiomaRt's getSequence
7.3 years ago by spiral01 ▴ 110
1
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4
replies
3.3k
views
Using multiple filters in BiomaRt's getSequence
r biomart ensembl
updated 7.3 years ago by 24k • written 7.3 years ago by ▴ 110
0
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1
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2.0k
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Comment: C: Denisovan and Altai Neanderthal .bed files?
7.3 years ago by spiral01 ▴ 110
2
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4
replies
2.0k
views
Denisovan and Altai Neanderthal .bed files?
snp
7.3 years ago by spiral01 ▴ 110
0
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0
replies
1.3k
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Comment: C: Estimating site information from 1000 genomes vcf data
7.3 years ago by spiral01 ▴ 110
3
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2
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1.3k
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Estimating site information from 1000 genomes vcf data
SNP
7.3 years ago by spiral01 ▴ 110
0
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1
reply
2.1k
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snpEff 'WARNING_REF_DOES_NOT_MATCH_GENOME' during hg38 annotation
SNP
7.4 years ago by spiral01 ▴ 110
0
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1
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2.6k
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Comment: C: 1000genomes: choosing the best annotation from multiple transcripts
7.4 years ago by spiral01 ▴ 110
0
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1
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2.6k
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Comment: C: 1000genomes: choosing the best annotation from multiple transcripts
7.4 years ago by spiral01 ▴ 110
4
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5
replies
2.6k
views
1000genomes: choosing the best annotation from multiple transcripts
genome SNP
updated 7.4 years ago by ▴ 400 • written 7.4 years ago by ▴ 110
14
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12
replies
4.7k
views
How large are 1000genomes vcf files?
vcf
updated 7.4 years ago by 101k • written 7.4 years ago by ▴ 110
0
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0
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4.7k
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Comment: C: How large are 1000genomes vcf files?
7.4 years ago by spiral01 ▴ 110
1
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2
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4.7k
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Comment: C: How large are 1000genomes vcf files?
7.4 years ago by spiral01 ▴ 110
1
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0
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4.7k
views
Comment: C: How large are 1000genomes vcf files?
7.4 years ago by spiral01 ▴ 110
1
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1
reply
4.7k
views
Comment: C: How large are 1000genomes vcf files?
7.4 years ago by spiral01 ▴ 110
0
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1
reply
4.7k
views
Comment: C: How large are 1000genomes vcf files?
7.4 years ago by spiral01 ▴ 110
0
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1
reply
1.8k
views
PyVCF error: KeyError: 'ANN' when appending annotation fields to a list
python PyVCF snp
7.4 years ago by spiral01 ▴ 110
0
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0
replies
2.5k
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Comment: C: Acquiring and combining hg38 SNP and gene data
7.5 years ago by spiral01 ▴ 110
4
votes
11
replies
2.5k
views
Acquiring and combining hg38 SNP and gene data
SNP gene
updated 7.5 years ago by ▴ 580 • written 7.5 years ago by ▴ 110
0
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1
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2.5k
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Comment: C: Acquiring and combining hg38 SNP and gene data
7.5 years ago by spiral01 ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: Acquiring and combining hg38 SNP and gene data
7.5 years ago by spiral01 ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: Acquiring and combining hg38 SNP and gene data
7.5 years ago by spiral01 ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: Acquiring and combining hg38 SNP and gene data
7.5 years ago by spiral01 ▴ 110
0
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0
replies
2.4k
views
Comment: C: Calculating LRT of a phylogenetic tree (as in codeml)
8.3 years ago by spiral01 ▴ 110
2
votes
2
replies
2.4k
views
Calculating LRT of a phylogenetic tree (as in codeml)
codeml paml lrt
updated 8.3 years ago by ★ 3.8k • written 8.3 years ago by ▴ 110
2
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1
reply
1.7k
views
phylogenetics: collapsing descendant tips of an internal node
phylogenetics r
8.3 years ago by spiral01 ▴ 110
1
vote
2
replies
6.4k
views
Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape
updated 8.5 years ago by ▴ 160 • written 8.5 years ago by ▴ 110
7
votes
6
replies
27k
views
Rooting phylogenetic trees in R using Ape's root function: Trees don't seem to root.
phylogenetics R
8.6 years ago by spiral01 ▴ 110
3
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1
reply
27k
views
Answer: A: Rooting phylogenetic trees in R using Ape's root function: Trees don't seem to r
8.6 years ago by spiral01 ▴ 110
1
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0
replies
27k
views
Comment: C: Rooting phylogenetic trees in R using Ape's root function: Trees don't seem to r
8.6 years ago by spiral01 ▴ 110
0
votes
1
reply
27k
views
Comment: C: Rooting phylogenetic trees in R using Ape's root function: Trees don't seem to r
8.6 years ago by spiral01 ▴ 110
0
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1
reply
2.0k
views
Comment: C: Parsing PhyloXML to split gene trees at duplication nodes
8.6 years ago by spiral01 ▴ 110
2
votes
3
replies
2.0k
views
Parsing PhyloXML to split gene trees at duplication nodes
PhyloXML BioPython gene trees
updated 8.6 years ago by ★ 2.8k • written 8.6 years ago by ▴ 110
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