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1.4k
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Extract VCF from genome assemblies of multiple individuals
SNP Structural Variation VCF Genomes alignment
5.7 years ago by Anand Rao ▴ 640
1
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0
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1.7k
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Answer: A: Which NGS aligner to find inexact matches
5.8 years ago by Anand Rao ▴ 640
2
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6
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1.7k
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Which NGS aligner to find inexact matches
DNA alignment NGS aligner genome coordinates NGS
5.8 years ago by Anand Rao ▴ 640
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0
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1.7k
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Comment: C: Which NGS aligner to find inexact matches
5.8 years ago by Anand Rao ▴ 640
0
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1
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1.7k
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Comment: C: Which NGS aligner to find inexact matches
5.8 years ago by Anand Rao ▴ 640
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2.6k
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Comment: C: bedtools subtract still overlaps by 1bp?
5.8 years ago by Anand Rao ▴ 640
0
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1
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2.6k
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Comment: C: bedtools subtract still overlaps by 1bp?
5.8 years ago by Anand Rao ▴ 640
4
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4
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2.6k
views
bedtools subtract still overlaps by 1bp?
bedtools getfasta slop subtract
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 640
1
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1
reply
3.3k
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Choosing tool for DNA secondary structure stem-loop prediction
secondary stem loop DNA software
5.8 years ago by Anand Rao ▴ 640
1
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0
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3.3k
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Answer: A: Choosing tool for DNA secondary structure stem-loop prediction
5.8 years ago by Anand Rao ▴ 640
20
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4
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11k
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Bulk download of entire BioProject SRA
SRA NCBI sratoolkit entrez utilities BioProject
updated 5.8 years ago by 3.2k • written 5.8 years ago by ▴ 640
0
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0
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191k
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Comment: C: How to download raw sequence data from GEO/SRA
5.8 years ago by Anand Rao ▴ 640
12
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2
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4.0k
views
Visualize multiple GFF files
GFF overlap statistics visualization
updated 5.9 years ago by 21k • written 6.3 years ago by ▴ 640
4
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1
reply
4.8k
views
Answer: A: mummerplot for genome self alignment NOT yielding full length diagonal graph
5.9 years ago by Anand Rao ▴ 640
4
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2
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4.8k
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mummerplot for genome self alignment NOT yielding full length diagonal graph
mummer nucmer mummerplot genome alignment
5.9 years ago by Anand Rao ▴ 640
1
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0
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2.3k
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Comment: C: CD-HIT results without sorting by length
5.9 years ago by Anand Rao ▴ 640
0
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0
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2.3k
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Comment: C: CD-HIT results without sorting by length
5.9 years ago by Anand Rao ▴ 640
3
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5
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2.3k
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CD-HIT results without sorting by length
clustering CD-HIT sort length
5.9 years ago by Anand Rao ▴ 640
0
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0
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1.6k
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Comment: C: Merge intervals between but NOT within 2 BED files
6.2 years ago by Anand Rao ▴ 640
2
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5
replies
1.6k
views
Merge intervals between but NOT within 2 BED files
bedtools merge overlap bedops
updated 6.2 years ago by 36k • written 6.2 years ago by ▴ 640
0
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0
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1.6k
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Comment: C: Merge intervals between but NOT within 2 BED files
6.2 years ago by Anand Rao ▴ 640
0
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0
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3.5k
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Comment: C: Phylogenetic tree from single copy core genes (metazoa proteomes)
6.3 years ago by Anand Rao ▴ 640
1
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0
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3.5k
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Answer: A: Phylogenetic tree from single copy core genes (metazoa proteomes)
6.3 years ago by Anand Rao ▴ 640
1
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3
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1.8k
views
bedtools strategy to report both merged AND unmerged intervals
bedtools merge unmerged gff3
6.3 years ago by Anand Rao ▴ 640
0
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1
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1.8k
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Answer: A: bedtools strategy to report both merged AND unmerged intervals
6.3 years ago by Anand Rao ▴ 640
0
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0
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1.5k
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AUGUSTUS protein profile run error
augustus ppx error
6.3 years ago by Anand Rao ▴ 640
2
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2
replies
1.1k
views
collapsing GFF coordinates with common start OR stop
GFF parse script bedtools Perl
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 640
8
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4
replies
5.1k
views
SPAdes assembler k-mer > default 127 possible?
Genome assembly SPAdes k-mer
updated 6.5 years ago by ▴ 50 • written 7.2 years ago by ▴ 640
11
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10
replies
6.3k
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Best mapping software to generate BAM file
BAM mapping
updated 7.0 years ago by 20 • written 7.1 years ago by ▴ 640
0
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0
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1.5k
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Simulating Core / Accessory genome for incomplete genome assemblies
Core Accessory Simulation Incomplete draft
7.1 years ago by Anand Rao ▴ 640
0
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2
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6.3k
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Comment: C: Best mapping software to generate BAM file
7.1 years ago by Anand Rao ▴ 640
0
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1
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6.3k
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Comment: C: Best mapping software to generate BAM file
7.1 years ago by Anand Rao ▴ 640
0
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1
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2.6k
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Comment: C: Assess and correct any GC bias in Illumina HiSeq 4000 data
7.1 years ago by Anand Rao ▴ 640
3
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3
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2.6k
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Assess and correct any GC bias in Illumina HiSeq 4000 data
GC bias Illumina HiSeq 4000 coverage depth
updated 7.1 years ago by 20k • written 7.1 years ago by ▴ 640
9
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3
replies
8.0k
views
Illumina R1 vs. R2 read quality differences - reasons?
read quality illumina PE
updated 7.2 years ago by 101k • written 7.2 years ago by ▴ 640
1
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0
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8.0k
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Comment: C: Illumina R1 vs. R2 read quality differences - reasons?
7.2 years ago by Anand Rao ▴ 640
0
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0
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2.3k
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Comment: C: Assessment of de novo genome assembly accuracy ?
7.2 years ago by Anand Rao ▴ 640
0
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0
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1.6k
views
ALLPATHS-LG error correction Perl script run error
ALLPATHS-LG error correction Perl run error
updated 7.2 years ago by 20 • written 7.2 years ago by ▴ 640
0
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1
reply
3.8k
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Comment: C: Average Nucleotide Identity Calculation among bacterial genomes
7.2 years ago by Anand Rao ▴ 640
1
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1
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4.7k
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Comment: C: How to measure NGS depth coverage bias
7.2 years ago by Anand Rao ▴ 640
7
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4
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4.7k
views
How to measure NGS depth coverage bias
NGS Illumina sequencing depth coverage bias
updated 7.2 years ago by ★ 1.6k • written 7.2 years ago by ▴ 640
1
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0
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3.0k
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Comment: C: primer design to discriminate sequences in intron-exon MSA
7.2 years ago by Anand Rao ▴ 640
0
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1
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3.0k
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Comment: C: primer design to discriminate sequences in intron-exon MSA
7.2 years ago by Anand Rao ▴ 640
0
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0
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2.2k
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Answer: A: REAPR run error
7.2 years ago by Anand Rao ▴ 640
1
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1
reply
2.2k
views
REAPR run error
REAPR SMALT run error
7.2 years ago by Anand Rao ▴ 640
0
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1
reply
1.7k
views
a5miseq syntax help
a5miseq syntax Fastq format custom adapters
updated 7.2 years ago by 147k • written 7.2 years ago by ▴ 640
0
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1
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7.7k
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Comment: C: Assembler for large genome de novo assembly with Illumina paired end reads of 15
7.2 years ago by Anand Rao ▴ 640
1
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0
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2.6k
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A5 pipeline begin and end
A5 pipeline genome assembly assembler
7.2 years ago by Anand Rao ▴ 640
0
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0
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2.2k
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Comment: C: a5 assembly Error building contigs with IDBA
7.2 years ago by Anand Rao ▴ 640
0
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1
reply
4.5k
views
Comment: C: error correction using BBTools
7.2 years ago by Anand Rao ▴ 640
215 results • Page 3 of 5
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