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3
votes
1
reply
3.4k
views
Merging stringtie assemblies using stringtie merge
RNA-Seq
stringtie
merge
transcriptome
assembly
7.7 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
7.2k
views
Comment:
C: Warning encountered while transcript abundance estimation using stringtie
7.7 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
1.6k
views
Comment:
C: The problem using samtools stats
7.7 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
7.2k
views
Comment:
C: Warning encountered while transcript abundance estimation using stringtie
7.7 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
7.2k
views
Comment:
C: Warning encountered while transcript abundance estimation using stringtie
7.7 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
7.2k
views
Comment:
C: Warning encountered while transcript abundance estimation using stringtie
7.7 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
7.2k
views
Comment:
C: Warning encountered while transcript abundance estimation using stringtie
7.7 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
34k
views
Answer:
A: How to systematically check if a bam file is truncated
7.7 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
4.2k
views
Comment:
C: Error running gffcompare
7.7 years ago by
lakhujanivijay
5.9k
1
vote
3
replies
4.2k
views
Error running gffcompare
gffcompare
gff
stringtie
RNA-Seq
updated 7.7 years ago by
Matteo Schiavinato
★ 3.6k • written 7.7 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
6.0k
views
Comment:
C: Counting k-mers in a multifasta file
7.7 years ago by
lakhujanivijay
5.9k
0
votes
2
replies
3.4k
views
Comment:
C: Big Genome Assembly of Medicinal Plant
8.0 years ago by
lakhujanivijay
5.9k
0
votes
2
replies
4.8k
views
Comment:
C: Error executing bedops convert2bed
8.0 years ago by
lakhujanivijay
5.9k
1
vote
17
replies
4.8k
views
Error executing bedops convert2bed
bedops
bed
vcf
convert2bed
8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
2.9k
views
Comment:
C: What is the best method to map snps called using GATK to corresponding genes?
8.0 years ago by
lakhujanivijay
5.9k
1
vote
3
replies
2.9k
views
What is the best method to map snps called using GATK to corresponding genes?
SNP
GATK
gene
updated 8.0 years ago by
Medhat
9.8k • written 8.0 years ago by
lakhujanivijay
5.9k
7
votes
6
replies
5.3k
views
Filtering out the variants annotated as "FILTER" from vcf file using GATK
GATK
vcf
filter
SNP
updated 8.0 years ago by
Pierre Lindenbaum
164k • written 8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
5.3k
views
Comment:
C: Filtering out the variants annotated as "FILTER" from vcf file using GATK
8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
5.3k
views
Comment:
C: Filtering out the variants annotated as "FILTER" from vcf file using GATK
8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
2.4k
views
Comment:
C: Weird issue with bam file generated by samtools
8.0 years ago by
lakhujanivijay
5.9k
4
votes
3
replies
2.4k
views
Weird issue with bam file generated by samtools
samtools
bam
bwa mem
updated 8.0 years ago by
Devon Ryan
105k • written 8.0 years ago by
lakhujanivijay
5.9k
2
votes
0
replies
5.6k
views
Answer:
A: 16S rRNA seq software
8.0 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
3.0k
views
Comment:
C: Possible bug in seqkit?
8.0 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
3.0k
views
Comment:
C: Possible bug in seqkit?
8.0 years ago by
lakhujanivijay
5.9k
12
votes
10
replies
3.0k
views
Possible bug in seqkit?
seqkit
fasta
stats
8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
4.9k
views
Comment:
C: how to extract particular regions of a sequence from fasta file if its range fo
8.0 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
1.2k
views
Comment:
C: to separate assembled reads on the basis of size.
8.0 years ago by
lakhujanivijay
5.9k
3
votes
0
replies
4.9k
views
Comment:
C: how to extract particular regions of a sequence from fasta file if its range fo
8.0 years ago by
lakhujanivijay
5.9k
1
vote
0
replies
1.2k
views
Answer:
A: after completing the de-novo assembly i got my transcriptome. is there any tool
8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
1.9k
views
Understanding the key concept of per gene coverage in context to WGS
wgs
per gene coverage
htseq
updated 8.0 years ago by
Brian Bushnell
20k • written 8.0 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
2.9k
views
Answer:
A: Metagenomic data assembly.
8.0 years ago by
lakhujanivijay
5.9k
2
votes
0
replies
9.4k
views
Answer:
A: BWA error [bns_restore_core] Parse error reading
8.0 years ago by
lakhujanivijay
5.9k
1
vote
1
reply
8.6k
views
Answer:
A: Qiime file for Krona pie chart?
8.0 years ago by
lakhujanivijay
5.9k
1
vote
1
reply
3.2k
views
Answer:
A: Can't import HTSeq module in python promt
8.1 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
2.4k
views
Answer:
A: perl script for overlap algo
8.1 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
1.0k
views
Answer:
A: Is possible that my gene has 3'-5' sense?
8.1 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
3.6k
views
Comment:
C: Help required to write a one liner to gunzip (and retain gzipped files) for mul
8.1 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
3.6k
views
Comment:
C: Help required to write a one liner to gunzip (and retain gzipped files) for mul
8.1 years ago by
lakhujanivijay
5.9k
2
votes
8
replies
3.6k
views
Help required to write a one liner to gunzip (and retain gzipped files) for multiple files.
fastq
gunzip
updated 8.1 years ago by
WouterDeCoster
47k • written 8.1 years ago by
lakhujanivijay
5.9k
1
vote
0
replies
2.1k
views
Answer:
A: Need Clarity/ Suggestions on Medip Seq Data analysis
8.1 years ago by
lakhujanivijay
5.9k
1
vote
0
replies
3.3k
views
Answer:
A: stimulating 300 bp paired end reads for illumina data from ART software
8.1 years ago by
lakhujanivijay
5.9k
0
votes
0
replies
3.7k
views
Comment:
C: Error: assigin taxonomy, pick_open_reference_otus.py
8.1 years ago by
lakhujanivijay
5.9k
1
vote
1
reply
21k
views
Comment:
C: How to extract unmapped Paired end reads from BWA output sam file
8.1 years ago by
lakhujanivijay
5.9k
1
vote
2
replies
21k
views
Comment:
C: How to extract unmapped Paired end reads from BWA output sam file
8.1 years ago by
lakhujanivijay
5.9k
1
vote
1
reply
21k
views
Comment:
C: How to extract unmapped Paired end reads from BWA output sam file
8.1 years ago by
lakhujanivijay
5.9k
2
votes
1
reply
21k
views
Comment:
C: How to extract unmapped Paired end reads from BWA output sam file
8.1 years ago by
lakhujanivijay
5.9k
2
votes
1
reply
21k
views
Comment:
C: How to extract unmapped Paired end reads from BWA output sam file
8.1 years ago by
lakhujanivijay
5.9k
6
votes
1
reply
21k
views
Answer:
A: How to extract unmapped Paired end reads from BWA output sam file
8.1 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
2.5k
views
Answer:
A: Edit a single base in SeqRecord object in Biopython?
8.1 years ago by
lakhujanivijay
5.9k
0
votes
1
reply
4.1k
views
Comment:
C: perl programming query
8.1 years ago by
lakhujanivijay
5.9k
896 results • Page
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