Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
1.9k
views
Comment: C: Union of unaligned fastq reads
7.5 years ago by Jeffin Rockey ★ 1.3k
1
vote
1
reply
1.9k
views
Comment: C: Union of unaligned fastq reads
7.5 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
1.9k
views
Comment: C: Union of unaligned fastq reads
7.5 years ago by Jeffin Rockey ★ 1.3k
1
vote
1
reply
1.9k
views
Comment: C: Union of unaligned fastq reads
7.5 years ago by Jeffin Rockey ★ 1.3k
9
votes
8
replies
1.9k
views
Union of unaligned fastq reads
RNA-Seq
7.5 years ago by Jeffin Rockey ★ 1.3k
2
votes
0
replies
2.3k
views
Answer: A: to much time for using cufflinks
7.5 years ago by Jeffin Rockey ★ 1.3k
4
votes
1
reply
5.3k
views
Answer: A: Faster way to get coverage per base
7.7 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
2.2k
views
Comment: C: error in bowtie 2
7.8 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
2.9k
views
Answer: A: From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcrip
7.8 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
6.8k
views
Answer: A: CONVERT GFF TO GTF
7.9 years ago by Jeffin Rockey ★ 1.3k
1
vote
1
reply
2.9k
views
Answer: A: BAM to fastq with Tophat aligned files
7.9 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
1.9k
views
Answer: A: intersectBed - multiple intersections
7.9 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
16k
views
Answer: A: Converting from BED to SAF/GFF
7.9 years ago by Jeffin Rockey ★ 1.3k
2
votes
1
reply
2.8k
views
Answer: A: coverage on exons with bedtools genomecov
updated 8.0 years ago by 147k • written 8.0 years ago by ★ 1.3k
0
votes
0
replies
7.1k
views
Comment: C: Extract exon and splice site information from gff files for HISAT analysis
8.0 years ago by Jeffin Rockey ★ 1.3k
2
votes
1
reply
7.1k
views
Answer: A: Extract exon and splice site information from gff files for HISAT analysis
8.0 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
3.2k
views
Comment: C: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
8.0 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
2.3k
views
Answer: A: Extraction of Intergenic Regions and Features from Gene Coordinates and Gene Det
8.0 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
1.8k
views
Comment: C: coverageBed / Prokka help
8.1 years ago by Jeffin Rockey ★ 1.3k
2
votes
0
replies
7.7k
views
Answer: A: Script to sort bam file not working
8.1 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
17k
views
Answer: A: Tophat error: missing .bt2l but I only have .bt2 files
8.1 years ago by Jeffin Rockey ★ 1.3k
2
votes
1
reply
1.7k
views
Answer: A: Mapping /Need software
8.1 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
4.3k
views
Answer: A: Recommended doc for interpreting STAR alignment stats
8.1 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
1.3k
views
Comment: A: For cufflinks error of using gff files
8.1 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
8.6k
views
Comment: C: ChIP-Seq TSS Line Plot
8.2 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
1.2k
views
Answer: A: Quick question about Cuffdiff assembly option
8.2 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
5.5k
views
Answer: A: CNV caller software
8.2 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
2.8k
views
Answer: A: RNA-seq for bacteria
8.2 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
2.2k
views
Comment: C: cn-mops Error "Missing refSeqName"
8.2 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
2.5k
views
Answer: A: Cuffflinks installation problem
updated 8.2 years ago by 147k • written 8.2 years ago by ★ 1.3k
2
votes
1
reply
3.3k
views
Comment: C: Extract all BED intervals between genomic coordinates
8.2 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
6.4k
views
Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
8.2 years ago by Jeffin Rockey ★ 1.3k
0
votes
1
reply
6.4k
views
Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
8.2 years ago by Jeffin Rockey ★ 1.3k
0
votes
1
reply
6.4k
views
Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
8.2 years ago by Jeffin Rockey ★ 1.3k
2
votes
0
replies
3.1k
views
Answer: A: parsing through gtf file
8.3 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
2.5k
views
Answer: A: How to find % alignment of total reads to genic region?
8.3 years ago by Jeffin Rockey ★ 1.3k
0
votes
0
replies
2.8k
views
Comment: C: Get location annotation information from SNP position in genome
8.3 years ago by Jeffin Rockey ★ 1.3k
2
votes
1
reply
2.8k
views
Comment: C: Get location annotation information from SNP position in genome
8.3 years ago by Jeffin Rockey ★ 1.3k
2
votes
1
reply
4.2k
views
Answer: A: Maximum spliced alignment overhang in STAR output
8.3 years ago by Jeffin Rockey ★ 1.3k
0
votes
1
reply
36k
views
Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
8.3 years ago by Jeffin Rockey ★ 1.3k
0
votes
1
reply
36k
views
Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
8.3 years ago by Jeffin Rockey ★ 1.3k
25
votes
2
replies
36k
views
Answer: A: SAM FLAG for primary alignments, secondary alignments and what's their relations
8.3 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
2.7k
views
Comment: C: Cuffdiff hangs at "Inspecting maps and determining fragment length distributions
8.3 years ago by Jeffin Rockey ★ 1.3k
0
votes
1
reply
4.7k
views
Answer: A: Mapping with Tophat
8.4 years ago by Jeffin Rockey ★ 1.3k
0
votes
1
reply
4.4k
views
Comment: C: Analyzing types of Junctions from BAM and GTF files
8.5 years ago by Jeffin Rockey ★ 1.3k
2
votes
1
reply
4.4k
views
Answer: A: Analyzing types of Junctions from BAM and GTF files
8.5 years ago by Jeffin Rockey ★ 1.3k
146 results • Page 3 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6