Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
534
views
Comment: Comment: How to find genes with altered CNV from CNVkit output?
4 months ago by ahmad mousavi ▴ 800
0
votes
1
reply
534
views
Comment: Comment: How to find genes with altered CNV from CNVkit output?
4 months ago by ahmad mousavi ▴ 800
3
votes
4
replies
534
views
How to find genes with altered CNV from CNVkit output?
wes cnv wgs ngs
4 months ago by ahmad mousavi ▴ 800
2
votes
1
reply
662
views
Answer: Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
9 months ago by ahmad mousavi ▴ 800
2
votes
2
replies
632
views
Need a spatial transcriptomics cancer data
NGS scRNA-Seq Single-Cell
updated 9 months ago by ★ 1.8k • written 9 months ago by ▴ 800
0
votes
1
reply
649
views
Comment: Comment: average of one column for each category of another column
9 months ago by ahmad mousavi ▴ 800
0
votes
1
reply
1.2k
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
9 months ago by ahmad mousavi ▴ 800
0
votes
1
reply
920
views
Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
10 months ago by ahmad mousavi ▴ 800
9
votes
2
replies
700
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq scrna-seq deg deseq2
updated 12 months ago by 4.5k • written 12 months ago by ▴ 800
0
votes
0
replies
1.2k
views
Answer: Answer: STAR ALIGNMENT
12 months ago by ahmad mousavi ▴ 800
0
votes
0
replies
1.2k
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
12 months ago by ahmad mousavi ▴ 800
0
votes
1
reply
1.2k
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
12 months ago by ahmad mousavi ▴ 800
2
votes
6
replies
1.2k
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv cnvkit
updated 9 months ago by 44k • written 12 months ago by ▴ 800
0
votes
0
replies
3.2k
views
Answer: Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
16 months ago by ahmad mousavi ▴ 800
0
votes
0
replies
625
views
Comment: Comment: Estimating sample size from bulk RNAseq data
16 months ago by ahmad mousavi ▴ 800
0
votes
1
reply
619
views
How to add annotation columns with specific colors to the heatmap?
R heatmap RNA-seq
updated 17 months ago by 44k • written 17 months ago by ▴ 800
0
votes
1
reply
1.5k
views
Answer: Answer: Variant identified, What next?
2.2 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
541
views
Comment: Comment: Carp mitochondrial genome
2.2 years ago by ahmad mousavi ▴ 800
1
vote
0
replies
944
views
Answer: Answer: BEDtools merge output
2.2 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
686
views
Answer: Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
2.2 years ago by ahmad mousavi ▴ 800
1
vote
0
replies
2.8k
views
Answer: Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
2.2 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
3.4k
views
Answer: Answer: Fold change cutoff for downregulated genes
2.3 years ago by ahmad mousavi ▴ 800
1
vote
0
replies
2.0k
views
Answer: Answer: Skills for industry career in bioinformatics
2.4 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
1.2k
views
Answer: Answer: Expected runtimes for GATK variant calling?
2.4 years ago by ahmad mousavi ▴ 800
2
votes
0
replies
1.2k
views
Answer: Answer: Bulk RNA-seq with genome but without gene annotation
2.4 years ago by ahmad mousavi ▴ 800
3
votes
0
replies
629
views
Answer: Answer: Using gtf file to get gene positions
2.4 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
66k
views
Answer: Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
2.5 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
644
views
Barcode whitelist in seurat
scRNA ngs scRNA-seq
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 800
0
votes
0
replies
897
views
Comment: Comment: How to demultiplex single cell rna-seq based on SNP mutation?
2.5 years ago by ahmad mousavi ▴ 800
1
vote
0
replies
1.3k
views
Answer: Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
2.5 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
1.9k
views
Comment: Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
2.5 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
897
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS RNA-SEQ singlecell scRNA-seq
2.5 years ago by ahmad mousavi ▴ 800
16
votes
5
replies
13k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr RNA-Seq gene R
updated 20 months ago by 44k • written 7.0 years ago by ▴ 800
4
votes
3
replies
6.3k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ NGS rna-seq
updated 2.9 years ago by ▴ 100 • written 3.1 years ago by ▴ 800
0
votes
0
replies
1.2k
views
Comment: Comment: Finding cluster specific markers in the Seurat object
3.1 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
1.2k
views
Finding cluster specific markers in the Seurat object
sequencing seurat scRNA scRNA-SEQ
3.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
7.8k
views
Comment: Comment: Which trajectory method is better !?
3.1 years ago by ahmad mousavi ▴ 800
6
votes
4
replies
7.8k
views
Which trajectory method is better !?
cell monocle3 monocle scRNA-SEQ single RNA-SEQ
3.1 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
677
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac scATAC
3.2 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
1.2k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
3.5 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
2.4k
views
Comment: Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
3.5 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
969
views
Rare cell population in single cell ATAC-Seq
atac-seq atac
updated 3.6 years ago by ▴ 110 • written 3.6 years ago by ▴ 800
0
votes
0
replies
1.3k
views
No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
3.6 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
962
views
Answer: A: SNP index definition
3.9 years ago by ahmad mousavi ▴ 800
0
votes
3
replies
3.2k
views
How to handle DNA methylation duplication in Bismark?
sequencing alignment
updated 4.2 years ago by 20 • written 6.9 years ago by ▴ 800
1
vote
5
replies
2.4k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq Assembly sequencing alignment
updated 4.5 years ago by 8.9k • written 4.5 years ago by ▴ 800
0
votes
0
replies
2.1k
views
Comment: C: Bacterial RNAseq - Help for beginner
4.6 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
2.1k
views
Answer: A: Bacterial RNAseq - Help for beginner
4.6 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
563
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.6 years ago by ahmad mousavi ▴ 800
20
votes
7
replies
6.7k
views
Tutorial: Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2 RNA-Seq R
updated 20 months ago by 44k • written 6.1 years ago by ▴ 800
116 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6