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Comment: C: How to make k-means clustering plot for relative expression?
4.6 years ago by ahmad mousavi ▴ 800
0
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0
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3.7k
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Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
4.7 years ago by ahmad mousavi ▴ 800
0
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1
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3.7k
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Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
4.7 years ago by ahmad mousavi ▴ 800
3
votes
4
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3.7k
views
How to make GFF file based on assembled transcriptome and genome sequence?
RNA-Seq Assembly ChIP-Seq sequencing
updated 4.7 years ago by 35k • written 4.7 years ago by ▴ 800
6
votes
7
replies
6.2k
views
6 follow
What are the best tools for visualizing DNA methylation result?
rrbs methylation RNA-Seq
updated 2.1 years ago by • 0 • written 6.4 years ago by ▴ 800
2
votes
2
replies
2.0k
views
What is the best pipeline for analyzing Non-invasive prenatal (NIPT) data?
genome next-gen alignment
updated 5.7 years ago by ▴ 10 • written 5.9 years ago by ▴ 800
8
votes
5
replies
4.4k
views
How to do DMR analysis with BiSeq (for RRBS methylation data)?
sequencing DMR methylation
updated 5.8 years ago by 8.3k • written 6.9 years ago by ▴ 800
1
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0
replies
3.5k
views
Comment: C: How to merge microarray and RNA-SEQ expression data for DEG analysis?
5.9 years ago by ahmad mousavi ▴ 800
5
votes
2
replies
3.5k
views
How to merge microarray and RNA-SEQ expression data for DEG analysis?
RNA-Seq microarray expression
updated 5.9 years ago by 88k • written 5.9 years ago by ▴ 800
0
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1
reply
3.3k
views
Answer: A: Differential expression analysis on miRNA count files
5.9 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
910
views
How much data and how many libraries do we need for de-novo assembly?
Assembly sequencing genome next-gen
updated 6.0 years ago by ★ 3.3k • written 6.0 years ago by ▴ 800
0
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1
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5.2k
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Comment: C: Too many contig after genome assembly with Spades
6.0 years ago by ahmad mousavi ▴ 800
0
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1
reply
5.2k
views
Comment: C: Too many contig after genome assembly with Spades
6.0 years ago by ahmad mousavi ▴ 800
0
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0
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1.8k
views
Answer: A: heat map clustering
6.0 years ago by ahmad mousavi ▴ 800
3
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0
replies
6.8k
views
Answer: A: TOPGO- how to do GO enrichment using a custom go database?
6.0 years ago by ahmad mousavi ▴ 800
0
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2
replies
5.2k
views
Comment: C: Too many contig after genome assembly with Spades
6.0 years ago by ahmad mousavi ▴ 800
6
votes
14
replies
5.2k
views
Too many contig after genome assembly with Spades
assembly genome sequence
6.0 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
10.0k
views
Answer: A: How long is the waiting time for a job to run?
6.0 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
6.7k
views
Comment: C: Showing up and down regulated GO and pathway using enrichR and ggplot2
6.0 years ago by ahmad mousavi ▴ 800
0
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1
reply
4.8k
views
Comment: C: Converting Blast output to GFF
6.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
4.8k
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Comment: C: Converting Blast output to GFF
6.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
1.3k
views
Answer: A: Using HTSeq-count on a SAM file?
6.0 years ago by ahmad mousavi ▴ 800
3
votes
5
replies
4.8k
views
Converting Blast output to GFF
Assembly genome blast
updated 3.6 years ago by • 0 • written 6.0 years ago by ▴ 800
0
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0
replies
1.4k
views
Comment: C: Remove lines from a toptable that have an empty ID (symbol)
6.0 years ago by ahmad mousavi ▴ 800
3
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2
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1.4k
views
Answer: A: removing lines from a toptable that have an empty ID (symbol)?
6.0 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
2.3k
views
Answer: A: Extract a word from inside the text
6.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
2.2k
views
Comment: C: What would be the trend in next few years in NGS era?
6.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
2.2k
views
Comment: C: What would be the trend in next few years in NGS era?
6.0 years ago by ahmad mousavi ▴ 800
17
votes
14
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2.2k
views
10 follow
Forum: What would be the trend in next few years in NGS era?
NGS sequencing
updated 18 months ago by 44k • written 6.0 years ago by ▴ 800
0
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0
replies
3.3k
views
Comment: C: Finding gene expression from TCGA pan cancer
6.1 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
3.3k
views
Answer: A: Finding gene expression from TCGA pan cancer
6.1 years ago by ahmad mousavi ▴ 800
0
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2
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5.0k
views
Comment: A: Making a counts
6.1 years ago by ahmad mousavi ▴ 800
0
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0
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4.3k
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Comment: C: How to do feature selection using PCA?
6.1 years ago by ahmad mousavi ▴ 800
0
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0
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4.3k
views
Comment: C: How to do feature selection using PCA?
6.1 years ago by ahmad mousavi ▴ 800
3
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0
replies
3.9k
views
Answer: A: miRNA/smallRNA adapter triming: Any recommendations for adaptor error rate and s
6.1 years ago by ahmad mousavi ▴ 800
1
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5
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4.3k
views
How to do feature selection using PCA?
RNA-Seq R pca
6.1 years ago by ahmad mousavi ▴ 800
0
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0
replies
4.2k
views
Answer: A: Best tool for Motif enrichment of TFs
6.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
9.1k
views
Comment: A: How to perform PCA on gene expression?
6.1 years ago by ahmad mousavi ▴ 800
1
vote
4
replies
2.5k
views
How to make cluster from gene read count?
RNA-Seq clustering R deseq2 edgeR
updated 6.1 years ago by ★ 2.0k • written 6.1 years ago by ▴ 800
25
votes
19
replies
14k
views
8 follow
How to make k-means clustering plot for relative expression?
RNA-Seq R deseq2
updated 6.1 years ago by ★ 2.0k • written 6.1 years ago by ▴ 800
0
votes
0
replies
3.0k
views
Answer: A: Should I specialise in bioinformatics?
6.1 years ago by ahmad mousavi ▴ 800
8
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3
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14k
views
Answer: A: How to make k-means clustering plot for relative expression?
6.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
14k
views
Comment: C: How to make k-means clustering plot for relative expression?
6.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
14k
views
Comment: C: How to make k-means clustering plot for relative expression?
6.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
14k
views
Comment: C: How to make k-means clustering plot for relative expression?
6.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
2.5k
views
Comment: C: How to make cluster from gene read count?
6.1 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
6.6k
views
Comment: C: How to add stats. to volcano plot?
6.1 years ago by ahmad mousavi ▴ 800
0
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1
reply
6.6k
views
Comment: C: How to add stats. to volcano plot?
6.1 years ago by ahmad mousavi ▴ 800
7
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5
replies
6.6k
views
How to add stats. to volcano plot?
RNA-Seq R ggplot2 plot
6.1 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
6.2k
views
Comment: C: What are the best tools for visualizing DNA methylation result?
6.2 years ago by ahmad mousavi ▴ 800
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