Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
4.0k
views
Answer: A: Can you assemble with merged paired end reads and unmatched reads as "single end
6.2 years ago by O.rka ▴ 740
6
votes
10
replies
4.0k
views
Can you assemble with merged paired end reads and unmatched reads as "single ended" reads?
Assembly
updated 3.6 years ago by 148k • written 6.2 years ago by ▴ 740
0
votes
1
reply
4.0k
views
Comment: C: Can you assemble with merged paired end reads and unmatched reads as "single end
6.2 years ago by O.rka ▴ 740
2
votes
2
replies
2.0k
views
Extracted mapped shotgun metagenomic reads to reference genome. SPAdes or metaSPAdes for de-novo assembly?
assembly metagenomics de-novo
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 740
0
votes
1
reply
4.0k
views
Comment: C: Can you assemble with merged paired end reads and unmatched reads as "single end
6.2 years ago by O.rka ▴ 740
4
votes
2
replies
2.2k
views
How to interpret sam file generated from BBMap?
alignment sequencing
updated 6.2 years ago by 14k • written 6.2 years ago by ▴ 740
1
vote
4
replies
2.2k
views
How to extract reads that match k-mer profiles from a collection of sequences?
sequencing
updated 6.2 years ago by 148k • written 6.2 years ago by ▴ 740
0
votes
0
replies
1.1k
views
Why does clustalo guidetree have negative values for branch lengths?
clustalo alignment tree clustal
6.4 years ago by O.rka ▴ 740
0
votes
0
replies
1.8k
views
How associate raw reads with MetaCyc/Taxonomy from HUMAnN2?
humann2 transcriptomics metacyc humann
6.4 years ago by O.rka ▴ 740
0
votes
1
reply
2.8k
views
Comment: A: Which method is good for getting logFC for pairwise comparsion of replicates?
6.7 years ago by O.rka ▴ 740
1
vote
0
replies
1.0k
views
Find list, flatfiles, or database of all gram + or - bacteria?
taxonomy
6.8 years ago by O.rka ▴ 740
0
votes
2
replies
3.7k
views
Comment: C: How to merge quality trimmed interlaced reads?
6.8 years ago by O.rka ▴ 740
3
votes
1
reply
1.1k
views
What is the minimum number of non-ribosomal reads that can be used for E. coli transcriptomics?
RNA-Seq
6.8 years ago by O.rka ▴ 740
5
votes
5
replies
8.7k
views
Is logFC in edgeR base e, 2, or 10?
edgeR logfc differential bioconductor
updated 6.8 years ago by 105k • written 6.8 years ago by ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.8 years ago by O.rka ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.8 years ago by O.rka ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.8 years ago by O.rka ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.8 years ago by O.rka ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.8 years ago by O.rka ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.8 years ago by O.rka ▴ 740
0
votes
0
replies
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.9 years ago by O.rka ▴ 740
11
votes
27
replies
7.8k
views
How to compare 2 separate coexpression networks each with the same genes?
coexpression network gene phenotype
6.9 years ago by O.rka ▴ 740
0
votes
2
replies
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.9 years ago by O.rka ▴ 740
0
votes
2
replies
7.8k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
2.1k
views
Where to download gff3 file for EcoCyc data?
genes assembly gff3 ecoli
updated 6.9 years ago by ▴ 230 • written 7.0 years ago by ▴ 740
0
votes
4
replies
1.9k
views
How to get descriptions for rs* SNP identifiers?
SNP genome vcf annotation
updated 6.9 years ago by ★ 18k • written 6.9 years ago by ▴ 740
0
votes
0
replies
1.9k
views
Comment: C: How to get descriptions for rs* SNP identifiers?
6.9 years ago by O.rka ▴ 740
0
votes
0
replies
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
0
votes
1
reply
11k
views
Comment: C: How to get SNP identifiers from VCF file?
6.9 years ago by O.rka ▴ 740
11
votes
15
replies
11k
views
How to get SNP identifiers from VCF file?
SNP vcf genome database clinical
updated 6.9 years ago by ★ 5.2k • written 6.9 years ago by ▴ 740
0
votes
0
replies
1.3k
views
Do counts need to be filtered for edgeR to properly work on metatranscriptome?
RNA-Seq metagenomics metatranscriptomics edgeR
6.9 years ago by O.rka ▴ 740
0
votes
0
replies
1.6k
views
Set percent identity and percent length covered in HISAT2 mapping
mapping hisat2 read sequencing genomics
7.3 years ago by O.rka ▴ 740
0
votes
0
replies
26k
views
Comment: C: Efficiently Iterating Over Fastq Records From Python
7.4 years ago by O.rka ▴ 740
1
vote
1
reply
2.3k
views
How to download all transcripts from Mouse with exons as upper case and introns as lower case?
RNA-Seq database genome mouse sequences
7.4 years ago by O.rka ▴ 740
0
votes
0
replies
1.3k
views
Functional information from de-novo orf calling in genome bins?
genomics orf functional properties de-novo
7.6 years ago by O.rka ▴ 740
0
votes
0
replies
4.6k
views
Comment: C: binary phenotype or discrete traits in wgcna analysis
7.7 years ago by O.rka ▴ 740
0
votes
0
replies
3.3k
views
Answer: A: Biopython hmmscan parser
7.7 years ago by O.rka ▴ 740
1
vote
1
reply
6.2k
views
What is `soft thresholding` with WGCNA?
wgcna network analysis correlation threshold
updated 7.8 years ago by ▴ 110 • written 8.3 years ago by ▴ 740
0
votes
0
replies
3.7k
views
Comment: C: any recommended tools for batch effect and normalization not written in R?
7.8 years ago by O.rka ▴ 740
0
votes
0
replies
62k
views
Comment: C: Rpkm Calculation For Genes
7.9 years ago by O.rka ▴ 740
2
votes
4
replies
3.6k
views
Advice on assembling very large metagenomic dataset?
metagenomics assembly genomics big-data large
updated 7.9 years ago by ▴ 30 • written 7.9 years ago by ▴ 740
0
votes
0
replies
2.4k
views
Weighted network (WGCNA) and Hive plot. Too many edges?
wgcna RNA-Seq network gene-expression hive plot
7.9 years ago by O.rka ▴ 740
0
votes
1
reply
4.6k
views
Comment: C: Displaying tree with attributes as Image with ETE3
8.3 years ago by O.rka ▴ 740
1
vote
1
reply
1.4k
views
Ways to put biological meaning on a group of microorganisms?
microbiome metagenomics microbial bacteria
updated 8.4 years ago by 27k • written 8.4 years ago by ▴ 740
410 results • Page 8 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6