Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
5.3k
views
Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
12.2 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
5.3k
views
Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
5.3k
views
Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
5.3k
views
Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
8.5k
views
Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
8.5k
views
Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
8.5k
views
Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
8.5k
views
Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
12.3 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
4.1k
views
Answer: A: Retrieve Pairs Sequences By Id Form Sam Or Bam File
12.3 years ago by Ryan Thompson ★ 3.6k
2
votes
0
replies
41k
views
Comment: C: Bowtie Building Index Issue
12.4 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
4.4k
views
Comment: C: Annotation In Gff3
12.4 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
4.4k
views
Comment: C: Annotation In Gff3
12.4 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
4.4k
views
Comment: C: Annotation In Gff3
12.4 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
4.4k
views
Comment: C: Annotation In Gff3
12.4 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
4.4k
views
Answer: A: Annotation In Gff3
12.4 years ago by Ryan Thompson ★ 3.6k
2
votes
0
replies
5.3k
views
Answer: A: Can I Pre-Build The Shared Transcriptome Index For A Series Of Tophat Runs?
12.4 years ago by Ryan Thompson ★ 3.6k
1
vote
0
replies
13k
views
Comment: C: Sequencing And Strands
12.5 years ago by Ryan Thompson ★ 3.6k
2
votes
0
replies
2.7k
views
Answer: A: How Many Chromosomes Have To Be Annotated For Human Beings?
12.5 years ago by Ryan Thompson ★ 3.6k
10
votes
0
replies
13k
views
Answer: A: Sequencing And Strands
12.5 years ago by Ryan Thompson ★ 3.6k
2
votes
0
replies
3.4k
views
Answer: A: What Is A "Coverage Island" In The Context Of Tophat?
12.5 years ago by Ryan Thompson ★ 3.6k
1
vote
2
replies
25k
views
Comment: C: Deseq, Edger And Cuffdiff - Different Result
12.5 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
3.6k
views
Answer: A: Cufflinks Or Cuffdiff (Or Both) For Frag-Bias-Correct?
12.5 years ago by Ryan Thompson ★ 3.6k
1
vote
0
replies
3.8k
views
Answer: A: Get Snps, Indels From Biopython Blast Parser
12.5 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
23k
views
Comment: C: Blast Two Sequences
12.6 years ago by Ryan Thompson ★ 3.6k
10
votes
1
reply
23k
views
Answer: A: Blast Two Sequences
12.6 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
3.6k
views
Comment: C: Computing Relative Coordinates Of One Bioconductor Granges Object To Another?
12.6 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
3.6k
views
Comment: C: Computing Relative Coordinates Of One Bioconductor Granges Object To Another?
12.6 years ago by Ryan Thompson ★ 3.6k
2
votes
1
reply
2.2k
views
Answer: A: Verifying Next Gen Seq Source
12.6 years ago by Ryan Thompson ★ 3.6k
4
votes
5
replies
3.6k
views
Computing Relative Coordinates Of One Bioconductor Granges Object To Another?
bioconductor coordinates
updated 12.6 years ago by ★ 1.5k • written 12.6 years ago by ★ 3.6k
0
votes
0
replies
9.5k
views
Comment: C: Why Does Macs Use A Genome Size Of 2.7 Billion Instead Of 3 Billion For Human?
12.6 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
9.5k
views
Comment: C: Why Does Macs Use A Genome Size Of 2.7 Billion Instead Of 3 Billion For Human?
12.6 years ago by Ryan Thompson ★ 3.6k
26
votes
9
replies
9.5k
views
Why Does Macs Use A Genome Size Of 2.7 Billion Instead Of 3 Billion For Human?
macs genome
updated 12.6 years ago by ★ 2.0k • written 12.6 years ago by ★ 3.6k
0
votes
0
replies
7.4k
views
Comment: C: Cuffdiff Is Taking Forever. Can I Parallelize It?
12.7 years ago by Ryan Thompson ★ 3.6k
1
vote
1
reply
6.6k
views
Answer: A: Is It Necessary To Do Read Trimming For Rna-Seq Data?
12.7 years ago by Ryan Thompson ★ 3.6k
29
votes
6
replies
7.3k
views
6 follow
Is There Any Reason To Do De Novo Transcript Assembly If A Reference Is Available?
rna denovo trinity cufflinks
updated 12.7 years ago by ★ 1.5k • written 12.7 years ago by ★ 3.6k
0
votes
0
replies
6.7k
views
Comment: C: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
12.7 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
7.5k
views
Answer: A: Reasons For Observing Non-Reference Allele In Everyone As Homozygous Genotype
12.7 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
10k
views
Comment: C: Which Aligner Should I Use For Mapping Bacterial Rna-Seq Data
12.7 years ago by Ryan Thompson ★ 3.6k
5
votes
2
replies
10k
views
Answer: A: Which Aligner Should I Use For Mapping Bacterial Rna-Seq Data
12.7 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
6.7k
views
Comment: C: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
12.7 years ago by Ryan Thompson ★ 3.6k
1
vote
0
replies
6.7k
views
Comment: C: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
12.7 years ago by Ryan Thompson ★ 3.6k
7
votes
6
replies
5.8k
views
How Can I Identify Orthologous Contigs Between Two De Novo Transcriptome Assemblies?
transcriptome assembly denovo trinity orthologues
updated 13.0 years ago by ★ 2.6k • written 13.0 years ago by ★ 3.6k
0
votes
0
replies
7.2k
views
Comment: C: Blast_Formatter: How To Choose Which Database To Read From?
13.0 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
9.1k
views
Comment: C: K-Mer Correction In Rna-Seq Data For Transcriptome Assembly?
13.0 years ago by Ryan Thompson ★ 3.6k
2
votes
0
replies
38k
views
Comment: C: Meaning Of Fpkm Value Used By Cufflinks
13.3 years ago by Ryan Thompson ★ 3.6k
1
vote
0
replies
5.8k
views
Comment: C: Intron Retention And Alternative 5'3' Splice Site Identification
13.3 years ago by Ryan Thompson ★ 3.6k
1
vote
0
replies
6.9k
views
Comment: C: Is There A Precise Specification For Fasta Files?
13.3 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
7.4k
views
Comment: C: Cuffdiff Is Taking Forever. Can I Parallelize It?
13.3 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
4.5k
views
Answer: A: Variable Length Reads In De Novo Assembly
13.3 years ago by Ryan Thompson ★ 3.6k
22
votes
8
replies
8.8k
views
What Can I Do With Rna-Seq Samples With Major Genomic Contamination?
rna
updated 13.3 years ago by 55k • written 13.4 years ago by ★ 3.6k
198 results • Page 3 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6