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Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer BigWig Coverage
updated 6.1 years ago by 20 • written 8.1 years ago by ▴ 570
2
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Answer: A: HISAT2-build killed: 9 macos
6.1 years ago by datascientist28 ▴ 570
2
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1
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2.8k
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HISAT2-build killed: 9 macOS
RNA-Seq hisat2 build index
6.1 years ago by datascientist28 ▴ 570
24
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27
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17k
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9 follow
What are the best tools for differential detection between ATAC-seq samples?
ATAC-seq next-gen
updated 6.5 years ago by ▴ 40 • written 8.0 years ago by ▴ 570
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2.7k
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Comment: C: For Mean Expression/FC Calculations in scRNA-seq, should I use All cells or only
6.5 years ago by datascientist28 ▴ 570
40
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40
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12k
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9 follow
What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
ATAC-seq alignment
updated 6.7 years ago by 88k • written 8.1 years ago by ▴ 570
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2.1k
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Comment: C: Naive BASH question on top to bottom programming regarding my alignment script
6.8 years ago by datascientist28 ▴ 570
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2.1k
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Comment: C: Naive BASH question on top to bottom programming regarding my alignment script
6.8 years ago by datascientist28 ▴ 570
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0
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2.1k
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Comment: C: Naive BASH question on top to bottom programming regarding my alignment script
6.8 years ago by datascientist28 ▴ 570
0
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1
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2.1k
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Comment: C: Naive BASH question on top to bottom programming regarding my alignment script
6.8 years ago by datascientist28 ▴ 570
0
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0
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2.1k
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Comment: C: Naive BASH question on top to bottom programming regarding my alignment script
6.8 years ago by datascientist28 ▴ 570
4
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11
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2.1k
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Naive BASH question on top to bottom programming regarding my alignment script
Unix bash
6.8 years ago by datascientist28 ▴ 570
0
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1
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
6.8 years ago by datascientist28 ▴ 570
0
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1
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
6.8 years ago by datascientist28 ▴ 570
0
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0
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18k
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Comment: C: Help understanding MACS2 --extsize and --shift
7.3 years ago by datascientist28 ▴ 570
15
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5
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18k
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Help understanding MACS2 --extsize and --shift
ATAC-seq MACS2 Peak Calling
updated 7.3 years ago by ▴ 110 • written 8.3 years ago by ▴ 570
5
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3
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2.7k
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Does read counts for ATAC-seq differential detection make sense?
ATAC-seq edgeR Differential Accessibility
7.3 years ago by datascientist28 ▴ 570
0
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0
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
7.4 years ago by datascientist28 ▴ 570
0
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1
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
7.4 years ago by datascientist28 ▴ 570
0
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0
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
7.5 years ago by datascientist28 ▴ 570
3
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2
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2.7k
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Filter by multiple columns above count threshold in R
RNA-seq workflow
updated 7.6 years ago by 55k • written 7.6 years ago by ▴ 570
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0
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3.1k
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Comment: C: Python VCF parser
7.7 years ago by datascientist28 ▴ 570
9
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17k
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Answer: A: Long Read Length, yet STAR says many reads too short
7.7 years ago by datascientist28 ▴ 570
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0
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3.4k
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Comment: C: Chip-seq on pooled replicates
7.7 years ago by datascientist28 ▴ 570
0
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0
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5.1k
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Comment: C: Samtools idxstats fails to load index
7.8 years ago by datascientist28 ▴ 570
0
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1
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5.1k
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Comment: C: Samtools idxstats fails to load index
7.8 years ago by datascientist28 ▴ 570
0
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0
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3.8k
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Comment: C: Should I be aligning to the Masked or Unmasked genome for ATAC-seq samples?
7.9 years ago by datascientist28 ▴ 570
0
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1
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3.8k
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Comment: C: Should I be aligning to the Masked or Unmasked genome for ATAC-seq samples?
7.9 years ago by datascientist28 ▴ 570
2
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4
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3.8k
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Should I be aligning to the Masked or Unmasked genome for ATAC-seq samples?
ATAC-seq Genome alignment
7.9 years ago by datascientist28 ▴ 570
2
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0
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1.4k
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Answer: A: Genomics/Computational Biology Jargon
7.9 years ago by datascientist28 ▴ 570
0
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0
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
7.9 years ago by datascientist28 ▴ 570
0
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2
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
8.0 years ago by datascientist28 ▴ 570
0
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0
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
8.0 years ago by datascientist28 ▴ 570
0
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1
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2.9k
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Comment: C: Is it better to remove MT reads by removing the MT Chromosome from your fasta or
8.0 years ago by datascientist28 ▴ 570
8
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4
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2.9k
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Is it better to remove MT reads by removing the MT Chromosome from your fasta or removing aligned MT reads post alignment?
ATAC-seq alignment
updated 8.0 years ago by ★ 2.7k • written 8.0 years ago by ▴ 570
5
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0
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4.5k
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Answer: A: ATAC Mapping rate
8.0 years ago by datascientist28 ▴ 570
0
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0
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92k
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Comment: C: Selecting Random Pairs From Fastq?
8.1 years ago by datascientist28 ▴ 570
0
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0
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6.4k
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Answer: A: STAR-RSEM RNA-seq pipeline is deterministic?
8.1 years ago by datascientist28 ▴ 570
0
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0
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6.4k
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Comment: C: STAR-RSEM RNA-seq pipeline is deterministic?
8.1 years ago by datascientist28 ▴ 570
0
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0
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12k
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Comment: C: What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
8.1 years ago by datascientist28 ▴ 570
0
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1
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6.4k
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Comment: C: STAR-RSEM RNA-seq pipeline is deterministic?
8.1 years ago by datascientist28 ▴ 570
1
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2
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6.4k
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Answer: A: STAR-RSEM RNA-seq pipeline is deterministic?
8.1 years ago by datascientist28 ▴ 570
0
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0
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12k
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Comment: C: cutadapt for trimming reads to specific length
8.1 years ago by datascientist28 ▴ 570
1
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0
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3.1k
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How does MACS2 assign pValue? and how does changing the cutoff effect results?
MACS2 ChIP-Seq ATAC-seq
8.1 years ago by datascientist28 ▴ 570
0
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0
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2.0k
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Answer: A: Statistical significance of ChIP-seq metaplot data
8.1 years ago by datascientist28 ▴ 570
1
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1
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12k
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Comment: C: What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
8.1 years ago by datascientist28 ▴ 570
0
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1
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2.0k
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Comment: C: Statistical significance of ChIP-seq metaplot data
8.1 years ago by datascientist28 ▴ 570
0
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1
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12k
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Comment: C: What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
8.1 years ago by datascientist28 ▴ 570
1
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0
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4.1k
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Comment: C: QC of RNA seq reads in R
8.1 years ago by datascientist28 ▴ 570
0
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1
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12k
views
Comment: C: What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
8.1 years ago by datascientist28 ▴ 570
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