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Comment: Comment: Build NCBI blast database with a specific genus or species
16 months ago by ThePresident ▴ 180
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2
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2.1k
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Comment: Comment: Build NCBI blast database with a specific genus or species
16 months ago by ThePresident ▴ 180
0
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0
replies
2.1k
views
Comment: Comment: Build NCBI blast database with a specific genus or species
16 months ago by ThePresident ▴ 180
0
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1
reply
2.1k
views
Comment: Comment: Build NCBI blast database with a specific genus or species
16 months ago by ThePresident ▴ 180
7
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10
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2.1k
views
Build NCBI blast database with a specific genus or species
ncbi blast
updated 16 months ago by 147k • written 16 months ago by ▴ 180
0
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3
replies
966
views
Automate fasta sequence ordering based on reference
reference denovo assembly contigs
updated 2.3 years ago by 7.0k • written 2.3 years ago by ▴ 180
0
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0
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966
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Comment: Comment: Automate fasta sequence ordering based on reference
2.3 years ago by ThePresident ▴ 180
0
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1
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1.1k
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Comment: Comment: Can snippy detect large insertions?
2.3 years ago by ThePresident ▴ 180
0
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3
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1.1k
views
Can snippy detect large insertions?
VCF snippy variants
updated 2.3 years ago by 3.8k • written 2.4 years ago by ▴ 180
0
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0
replies
1.2k
views
Comment: Comment: Using bcftools isec to filter for unique variants
2.4 years ago by ThePresident ▴ 180
0
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1
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1.2k
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Using bcftools isec to filter for unique variants
vcf variants bcftools vcftools
updated 17 months ago by 44k • written 2.4 years ago by ▴ 180
0
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5
replies
2.8k
views
bedtools multicov displays only the last BED feature
bedtools multicov
updated 5.5 years ago by • 0 • written 7.3 years ago by ▴ 180
4
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0
replies
56k
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Comment: C: How To Download All Sra Samples At Once ?
5.7 years ago by ThePresident ▴ 180
0
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1
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12k
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Comment: C: bwa for multiple fastq files
5.8 years ago by ThePresident ▴ 180
6
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8
replies
3.2k
views
Generating random DNA sequence and paired-end alignment
R Python Simulation
updated 6.4 years ago by ▴ 70 • written 8.3 years ago by ▴ 180
0
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1
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2.3k
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Comment: C: Align reads on multi-fasta (contigs) file?
6.4 years ago by ThePresident ▴ 180
2
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3
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2.3k
views
Align reads on multi-fasta (contigs) file?
bwa
6.4 years ago by ThePresident ▴ 180
0
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0
replies
1.7k
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Comment: C: Extracting multiple features using NCBI's e-utilities?
6.6 years ago by ThePresident ▴ 180
0
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1
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1.7k
views
Comment: C: Extracting multiple features using NCBI's e-utilities?
6.6 years ago by ThePresident ▴ 180
4
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4
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1.7k
views
Extracting multiple features using NCBI's e-utilities?
e-utilities perl
6.6 years ago by ThePresident ▴ 180
0
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2
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3.8k
views
Comment: C: Copy number variation using HTSeq/DESeq2
7.0 years ago by ThePresident ▴ 180
0
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0
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3.8k
views
Comment: C: Copy number variation using HTSeq/DESeq2
7.0 years ago by ThePresident ▴ 180
10
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9
replies
3.8k
views
Copy number variation using HTSeq/DESeq2
copy number DESeq HTSeq
updated 7.0 years ago by 47k • written 7.0 years ago by ▴ 180
1
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1
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3.6k
views
Comment: C: DAVID not accepting locus_tag identifiers. Alternatives?
7.1 years ago by ThePresident ▴ 180
0
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1
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3.6k
views
Comment: C: DAVID not accepting locus_tag identifiers. Alternatives?
7.1 years ago by ThePresident ▴ 180
3
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6
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3.6k
views
DAVID not accepting locus_tag identifiers. Alternatives?
DAVID locus_tag
7.1 years ago by ThePresident ▴ 180
1
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1
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2.6k
views
Comment: C: How to perform functional gene clustering?
7.1 years ago by ThePresident ▴ 180
3
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5
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2.6k
views
How to perform functional gene clustering?
DAVID clustering
updated 7.1 years ago by 88k • written 7.1 years ago by ▴ 180
0
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0
replies
2.6k
views
Comment: C: How to perform functional gene clustering?
7.1 years ago by ThePresident ▴ 180
0
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0
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5.9k
views
Comment: C: How to extract only 5-prime hard/soft clipped reads?
7.3 years ago by ThePresident ▴ 180
0
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1
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5.9k
views
Comment: C: How to extract only 5-prime hard/soft clipped reads?
7.3 years ago by ThePresident ▴ 180
4
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10
replies
5.9k
views
How to extract only 5-prime hard/soft clipped reads?
SAM clipping
7.3 years ago by ThePresident ▴ 180
1
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1
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5.9k
views
Answer: A: How to extract only 5-prime hard/soft clipped reads?
7.3 years ago by ThePresident ▴ 180
0
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1
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5.9k
views
Comment: C: How to extract only 5-prime hard/soft clipped reads?
7.3 years ago by ThePresident ▴ 180
0
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1
reply
5.9k
views
Comment: C: How to extract only 5-prime hard/soft clipped reads?
7.3 years ago by ThePresident ▴ 180
0
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1
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2.8k
views
Comment: C: Problems getting read number per gene after sequencing
7.3 years ago by ThePresident ▴ 180
0
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0
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2.8k
views
Comment: C: Problems getting read number per gene after sequencing
7.3 years ago by ThePresident ▴ 180
1
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1
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2.8k
views
Comment: C: Problems getting read number per gene after sequencing
7.3 years ago by ThePresident ▴ 180
0
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2
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2.8k
views
Comment: C: Problems getting read number per gene after sequencing
7.3 years ago by ThePresident ▴ 180
6
votes
12
replies
2.8k
views
Problems getting read number per gene after sequencing
HTSeq bedtools multicov
updated 7.3 years ago by 12k • written 7.3 years ago by ▴ 180
0
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0
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2.8k
views
Comment: C: Problems getting read number per gene after sequencing
7.3 years ago by ThePresident ▴ 180
0
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0
replies
4.1k
views
Comment: C: Fold coverage in simulated reads not what it says it is?
7.3 years ago by ThePresident ▴ 180
0
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0
replies
3.2k
views
Comment: C: Bwa producing no alignment
7.3 years ago by ThePresident ▴ 180
0
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0
replies
2.8k
views
Comment: C: bedtools multicov displays only the last BED feature
7.3 years ago by ThePresident ▴ 180
0
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1
reply
2.8k
views
Comment: C: bedtools multicov displays only the last BED feature
7.3 years ago by ThePresident ▴ 180
0
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1
reply
3.2k
views
Comment: C: Bwa producing no alignment
7.3 years ago by ThePresident ▴ 180
0
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0
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3.2k
views
Comment: C: Bwa producing no alignment
7.3 years ago by ThePresident ▴ 180
5
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9
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3.2k
views
Bwa producing no alignment
bwa
updated 7.3 years ago by 20 • written 7.5 years ago by ▴ 180
1
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0
replies
3.2k
views
Comment: C: Bwa producing no alignment
7.5 years ago by ThePresident ▴ 180
0
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0
replies
1.3k
views
Retrieving SRA datasets for completed bacterial genomes
SRA NCBI
7.5 years ago by ThePresident ▴ 180
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