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0
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2.1k
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How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (remove PCR duplicates)?
ddRAD next-gen Stacks DBR
updated 18 months ago by 44k • written 7.2 years ago by ▴ 600
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20k
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Comment: C: Difference Between Genotyping And Resequencing
6.4 years ago by beausoleilmo ▴ 600
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1
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1.4k
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Comment: C: What is the definition of "multiply aligned" sequences compared to multiple alig
6.4 years ago by beausoleilmo ▴ 600
0
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3
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1.4k
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What is the definition of "multiply aligned" sequences compared to multiple aligned sequence
sequence DNA alignment
6.4 years ago by beausoleilmo ▴ 600
0
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1
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1.7k
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Comment: C: Is whole genome pool-sequencing a reduced representation sequencing technique?
6.6 years ago by beausoleilmo ▴ 600
0
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1
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1.7k
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Comment: C: Is whole genome pool-sequencing a reduced representation sequencing technique?
6.6 years ago by beausoleilmo ▴ 600
5
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5
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1.7k
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Is whole genome pool-sequencing a reduced representation sequencing technique?
whole genome DNA sequencing
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 600
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2
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4.9k
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Comment: C: Difference between Allele frequency spectrum and Joint allele frequency spectrum
6.6 years ago by beausoleilmo ▴ 600
10
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4
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4.9k
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Difference between Allele frequency spectrum and Joint allele frequency spectrum
allele population structure
updated 18 months ago by ▴ 320 • written 6.6 years ago by ▴ 600
0
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0
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1.2k
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Is there a way to construct a pedigree using RADseq data?
RAD sequencing pedigree
6.7 years ago by beausoleilmo ▴ 600
0
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1
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15k
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Comment: C: What is population branch statistic (PBS)?
6.8 years ago by beausoleilmo ▴ 600
3
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3
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15k
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What is population branch statistic (PBS)?
population structure FST Natural Selection
updated 6.8 years ago by ▴ 670 • written 6.8 years ago by ▴ 600
4
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1
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8.0k
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How is it possible to create a .fam file with PLINK with phenotypic data (for GEMMA)?
plink fam vcftools Gemma
updated 7.0 years ago by 88k • written 7.9 years ago by ▴ 600
7
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2
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2.0k
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Why is there a star in some primer sequences (library preparation)
sequencing library DNA
updated 7.3 years ago by 47k • written 7.3 years ago by ▴ 600
0
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1
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5.0k
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Comment: C: What is the difference between a small-insert library, large-insert library and
7.4 years ago by beausoleilmo ▴ 600
3
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3
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5.0k
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What is the difference between a small-insert library, large-insert library and the reads themselves?
sequencing
updated 7.4 years ago by 20k • written 7.4 years ago by ▴ 600
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0
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1.3k
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Comment: C: What are modules and reactions in NGS?
7.4 years ago by beausoleilmo ▴ 600
0
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2
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1.3k
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What are modules and reactions in NGS?
NGS sequencing
7.4 years ago by beausoleilmo ▴ 600
3
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3
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2.5k
views
Is RADseq the same thing as Shotgun sequencing?
RADseq Shotgun sequencing
updated 7.5 years ago by 35k • written 7.5 years ago by ▴ 600
0
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0
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2.5k
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Comment: C: Is RADseq the same thing as Shotgun sequencing?
7.5 years ago by beausoleilmo ▴ 600
13
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17
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8.2k
views
Why is FastQC not working after using Trim galore?
fastq FASTQC Fastqc
updated 7.6 years ago by 35k • written 8.3 years ago by ▴ 600
1
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0
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4.7k
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Answer: A: VCFtools --minDP flags not working
7.7 years ago by beausoleilmo ▴ 600
4
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4
replies
4.7k
views
VCFtools --minDP flags not working
vcftools Read Depth
7.7 years ago by beausoleilmo ▴ 600
1
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0
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6.6k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.8 years ago by beausoleilmo ▴ 600
0
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1
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6.6k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.8 years ago by beausoleilmo ▴ 600
0
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1
reply
6.6k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.8 years ago by beausoleilmo ▴ 600
0
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1
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6.6k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.8 years ago by beausoleilmo ▴ 600
6
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11
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6.6k
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Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
EIGENSTRAT PLINK SNP PCA
updated 7.8 years ago by 4.5k • written 7.8 years ago by ▴ 600
3
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1
reply
3.2k
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Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
PLINK VCFtools sort ped bed
updated 7.8 years ago by 11k • written 7.8 years ago by ▴ 600
1
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0
replies
3.4k
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What does the -A "Matching score" and -B "Mismatch penalty" flags doing in BWA mem?
BWA Matching score penalty GWAS
7.9 years ago by beausoleilmo ▴ 600
0
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0
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1.2k
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filtering tips for GWAS studies (admixture mapping)
vcftools filtering GWAS VCF
7.9 years ago by beausoleilmo ▴ 600
3
votes
1
reply
9.2k
views
How to order Admixture (ancestry) plot in R
ADMIXTURE R q plot
updated 7.9 years ago by ★ 3.0k • written 7.9 years ago by ▴ 600
12
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9
replies
3.1k
views
Why is it absolutely necessary to filter a VCF?
VCF bcftools vcftools samtools filtering
updated 7.9 years ago by ★ 1.4k • written 7.9 years ago by ▴ 600
0
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1
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3.1k
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Comment: C: Why is it absolutely necessary to filter a VCF?
7.9 years ago by beausoleilmo ▴ 600
0
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1
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3.1k
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Comment: C: Why is it absolutely necessary to filter a VCF?
7.9 years ago by beausoleilmo ▴ 600
1
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0
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5.8k
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Answer: A: Can't figure out order of output rows in ADMIXTURE
7.9 years ago by beausoleilmo ▴ 600
0
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1
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6.6k
views
Answer: Answer: Help making ADMIXTURE output digestible
22 months ago by beausoleilmo ▴ 600
0
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0
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5.8k
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Comment: C: Can't figure out order of output rows in ADMIXTURE
7.9 years ago by beausoleilmo ▴ 600
0
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0
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6.6k
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Comment: C: Help making ADMIXTURE output digestible
7.9 years ago by beausoleilmo ▴ 600
0
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0
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2.5k
views
ADMIXTURE, size of .bed file not matching number of individuals in analysis
ADMIXTURE
7.9 years ago by beausoleilmo ▴ 600
6
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1
reply
3.9k
views
What does Number=0/Number=1 mean in a VCF?
VCF DNA GWAS
updated 7.9 years ago by 20k • written 7.9 years ago by ▴ 600
0
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0
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2.8k
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Comment: C: How common are Deletions and Indels?
7.9 years ago by beausoleilmo ▴ 600
0
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1
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2.8k
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Comment: C: How common are Deletions and Indels?
7.9 years ago by beausoleilmo ▴ 600
3
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4
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2.8k
views
How common are Deletions and Indels?
VCFtools RTG RADseq
updated 7.9 years ago by 20k • written 7.9 years ago by ▴ 600
0
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0
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2.4k
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VCFtools filter missing genotypes conditional on a factor (population, species, etc.)
VCFtools Filter NGS RAD
7.9 years ago by beausoleilmo ▴ 600
0
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0
replies
1.8k
views
Comment: C: Can Scaffolds overlap?
7.9 years ago by beausoleilmo ▴ 600
1
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2
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1.8k
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Can Scaffolds overlap?
Scaffolds contigs RADseq
7.9 years ago by beausoleilmo ▴ 600
0
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1
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1.9k
views
Answer: A: Why genome seq A% ~= T% and G% ~= C%
7.9 years ago by beausoleilmo ▴ 600
0
votes
1
reply
159k
views
Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
7.9 years ago by beausoleilmo ▴ 600
0
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0
replies
1.8k
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Is GEMMA able to run a bayesian sparse linear mixed model with the sex column?
plink GWAS GEMMA fam
updated 20 months ago by 44k • written 7.9 years ago by ▴ 600
142 results • Page 2 of 3
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