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832
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Comment: Comment: Htseq-count problem with gtf/gff file
3 months ago by Pierre Lindenbaum 164k
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333
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Comment: Comment: Human Genome
3 months ago by Pierre Lindenbaum 164k
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358
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Comment: Comment: What tool is best to build plasmid using a reference sequence?
3 months ago by Pierre Lindenbaum 164k
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648
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Comment: Comment: using parallel on samtools view
3 months ago by Pierre Lindenbaum 164k
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1
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648
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Comment: Comment: using parallel on samtools view
3 months ago by Pierre Lindenbaum 164k
1
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0
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330
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Comment: Comment: How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using
3 months ago by Pierre Lindenbaum 164k
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640
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Comment: Comment: Need to split a cram file into smaller pieces - how to extract and save cram for
3 months ago by Pierre Lindenbaum 164k
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2
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640
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Comment: Comment: Need to split a cram file into smaller pieces - how to extract and save cram for
3 months ago by Pierre Lindenbaum 164k
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264
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Comment: Comment: BWA-MEM PARAMETER TO DETECT MUTATION
3 months ago by Pierre Lindenbaum 164k
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1
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312
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Comment: Comment: NCBIWWW.qblast returning empty XML
3 months ago by Pierre Lindenbaum 164k
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3
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748
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Comment: Comment: Why do I have * in my FASTA?
3 months ago by Pierre Lindenbaum 164k
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1
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748
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Answer: Answer: Why do I have * in my FASTA?
3 months ago by Pierre Lindenbaum 164k
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0
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940
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Answer: Answer: Submitting a job in parallel on slurm
3 months ago by Pierre Lindenbaum 164k
1
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0
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219
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Answer: Answer: WGS variant filtering for exome
3 months ago by Pierre Lindenbaum 164k
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1
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1.1k
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Comment: Comment: why R scripts are preferred than biopython for RNA-Seq analyses?
3 months ago by Pierre Lindenbaum 164k
1
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0
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494
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Comment: Comment: Check if a BAM file is corrupt in Java
3 months ago by Pierre Lindenbaum 164k
1
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0
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494
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Answer: Answer: Check if a BAM file is corrupt in Java
3 months ago by Pierre Lindenbaum 164k
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0
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375
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Comment: Comment: bam file: unmapped but matching reads (samtools view -f 4)
3 months ago by Pierre Lindenbaum 164k
0
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0
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403
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Comment: Comment: Discrepancy between VCF and BAM file.
3 months ago by Pierre Lindenbaum 164k
1
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1
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850
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Comment: Comment: How do I find allele frequencies from GATK output?
3 months ago by Pierre Lindenbaum 164k
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0
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416
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Comment: Comment: VCFtools warning message
3 months ago by Pierre Lindenbaum 164k
1
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0
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416
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Comment: Comment: VCFtools warning message
3 months ago by Pierre Lindenbaum 164k
1
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1
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416
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Comment: Comment: VCFtools warning message
3 months ago by Pierre Lindenbaum 164k
0
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0
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235
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Comment: Comment: Technical Issue to building a database on snpEff for SNP calling annotation in
3 months ago by Pierre Lindenbaum 164k
0
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1
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358
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Comment: Comment: Why is one mate not in proper pair in one case, when it is in proper pair in a v
3 months ago by Pierre Lindenbaum 164k
0
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0
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456
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Comment: Comment: HTSLIB/VCF/C : get the first variant of each chromosome using htslib
3 months ago by Pierre Lindenbaum 164k
1
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2
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456
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HTSLIB/VCF/C : get the first variant of each chromosome using htslib
htslib vcf c
3 months ago by Pierre Lindenbaum 164k
1
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1
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358
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Answer: Answer: trailing paired-end slashes (/) in BAM file
3 months ago by Pierre Lindenbaum 164k
0
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1
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358
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Comment: Comment: trailing paired-end slashes (/) in BAM file
3 months ago by Pierre Lindenbaum 164k
1
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3
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437
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Answer: Answer: AWK script missing space after 3rd field
updated 3 months ago by 44k • written 3 months ago by 164k
0
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1
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434
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Comment: Comment: Variant Sampling programm
3 months ago by Pierre Lindenbaum 164k
0
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1
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434
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Comment: Comment: Variant Sampling programm
3 months ago by Pierre Lindenbaum 164k
0
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1
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434
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Comment: Comment: Variant Sampling programm
3 months ago by Pierre Lindenbaum 164k
0
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0
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308
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Comment: Comment: Any body know how to convert CHR_BP to SNP rsid?
updated 3 months ago by 147k • written 3 months ago by 164k
1
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1
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560
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Comment: Comment: How can I create an aesthetic gene neighborhood diagram from CSV data to showcas
4 months ago by Pierre Lindenbaum 164k
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0
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459
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Comment: Comment: Is there any tool that can search for a pattern (while allowing mismatch) in fas
4 months ago by Pierre Lindenbaum 164k
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0
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248
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Comment: Comment: Empty VCF after Strelka
4 months ago by Pierre Lindenbaum 164k
2
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1
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399
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Answer: Answer: Replace SB flag by PASS in my VCF file
4 months ago by Pierre Lindenbaum 164k
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1
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399
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Comment: Comment: Replace SB flag by PASS in my VCF file
4 months ago by Pierre Lindenbaum 164k
0
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0
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13k
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Comment: Comment: Get Snp Position From A Python Interface.
4 months ago by Pierre Lindenbaum 164k
2
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0
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234
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Answer: Answer: GATK4 VariantAnnotator deletes variants
4 months ago by Pierre Lindenbaum 164k
1
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1
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523
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Comment: Comment: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
4 months ago by Pierre Lindenbaum 164k
0
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1
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591
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Comment: Comment: Get position in GRCh38 from rsid
updated 4 months ago by 147k • written 4 months ago by 164k
2
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0
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237
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Answer: Answer: Filter vcf file by position AND alternative allele
4 months ago by Pierre Lindenbaum 164k
0
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0
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284
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Comment: Comment: Extract the Variables with the Most Influence on the Ordination in an LDA
4 months ago by Pierre Lindenbaum 164k
0
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0
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410
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Comment: Comment: retrieve genomic positions and chromosome number for a list of genes
4 months ago by Pierre Lindenbaum 164k
0
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1
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345
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Comment: Comment: CpG island identification
updated 4 months ago by 44k • written 4 months ago by 164k
1
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1
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410
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Answer: Answer: retrieve genomic positions and chromosome number for a list of genes
4 months ago by Pierre Lindenbaum 164k
1
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1
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373
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Answer: Answer: TB-PROFILER DELLY ISSUE
4 months ago by Pierre Lindenbaum 164k
1
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0
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321
views
Comment: Comment: When to use Sam Sort on a Bam file?
4 months ago by Pierre Lindenbaum 164k
12,795 results • Page 4 of 256
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