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2
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408
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Answer: Answer: Filtering VCF - minimal valid filter parametrs
6 months ago by Pierre Lindenbaum 164k
1
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747
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
6 months ago by Pierre Lindenbaum 164k
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7.2k
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Comment: Comment: Difference between proper paired reads and mapped and paired reads
6 months ago by Pierre Lindenbaum 164k
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1
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427
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Answer: Answer: Exome sequencing dataset
6 months ago by Pierre Lindenbaum 164k
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0
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492
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Comment: Comment: Filtering reads that map to both references
6 months ago by Pierre Lindenbaum 164k
0
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0
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292
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Comment: Comment: samsift can't find the AS tag to filter a bam file generated using bowtie2
6 months ago by Pierre Lindenbaum 164k
0
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1
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492
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Comment: Comment: Filtering reads that map to both references
6 months ago by Pierre Lindenbaum 164k
1
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0
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349
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Comment: Comment: dbNSFP4.7a database format to Annovar Format?
6 months ago by Pierre Lindenbaum 164k
1
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0
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349
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Comment: Comment: dbNSFP4.7a database format to Annovar Format?
6 months ago by Pierre Lindenbaum 164k
1
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2
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692
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Comment: Comment: Invalid CIGAR after using bam clipOverlap
6 months ago by Pierre Lindenbaum 164k
1
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1
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692
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Comment: Comment: Invalid CIGAR after using bam clipOverlap
6 months ago by Pierre Lindenbaum 164k
1
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0
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717
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Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
6 months ago by Pierre Lindenbaum 164k
2
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1
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717
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Answer: Answer: How to scrape BioMart data from https://sorfs.ugent.be/ website
6 months ago by Pierre Lindenbaum 164k
0
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1
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717
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Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
6 months ago by Pierre Lindenbaum 164k
0
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1
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593
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Comment: Comment: How to calculate nucleotide diversity (mtDNA, PacBio_data), Suggest me some tool
6 months ago by Pierre Lindenbaum 164k
0
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1
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701
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Comment: Comment: Error with BiocParallel. No barcodes files found
6 months ago by Pierre Lindenbaum 164k
0
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1
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537
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Comment: Comment: merge overlaps and remove non overlap genomic windows
6 months ago by Pierre Lindenbaum 164k
0
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1
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537
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Answer: Answer: merge overlaps and remove non overlap genomic windows
6 months ago by Pierre Lindenbaum 164k
0
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1
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774
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Comment: Comment: How to get the ratio of allele counts from GATK derived VCF file?
6 months ago by Pierre Lindenbaum 164k
1
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1
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774
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Answer: Answer: How to get the ratio of allele counts from GATK derived VCF file?
6 months ago by Pierre Lindenbaum 164k
0
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2
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933
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Comment: Comment: samtools write-index
updated 6 months ago by 147k • written 6 months ago by 164k
0
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0
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670
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Answer: Answer: from CRAM to fastq
updated 6 months ago by 147k • written 6 months ago by 164k
0
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1
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687
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Comment: Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
6 months ago by Pierre Lindenbaum 164k
0
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0
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416
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Comment: Comment: Question about samtools view flags (paired reads vs. properly paired reads)
6 months ago by Pierre Lindenbaum 164k
1
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1
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416
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Answer: Answer: Question about samtools view flags (paired reads vs. properly paired reads)
6 months ago by Pierre Lindenbaum 164k
0
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0
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432
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Comment: Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
6 months ago by Pierre Lindenbaum 164k
0
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0
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439
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Comment: Comment: Generating a Bed file from a Fasta file
6 months ago by Pierre Lindenbaum 164k
0
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1
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439
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Comment: Comment: Generating a Bed file from a Fasta file
6 months ago by Pierre Lindenbaum 164k
0
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0
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335
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Comment: Comment: Nextflow docker: Error response from daemon
6 months ago by Pierre Lindenbaum 164k
0
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1
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552
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Comment: Comment: Where to find old version of GATK best practice
6 months ago by Pierre Lindenbaum 164k
0
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1
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493
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Comment: Comment: Filter Genome for Specific Sites
6 months ago by Pierre Lindenbaum 164k
0
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0
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551
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Answer: Answer: GATK Structural Variants Pipeline - Steps
6 months ago by Pierre Lindenbaum 164k
0
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1
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579
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Comment: Comment: Why most genes have high padj values
6 months ago by Pierre Lindenbaum 164k
0
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0
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366
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Comment: Comment: How to find identical sequences in genome fasta file (by Python or any possible
6 months ago by Pierre Lindenbaum 164k
0
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0
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1.1k
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Comment: Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
6 months ago by Pierre Lindenbaum 164k
0
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0
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462
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Comment: Comment: How to generate table_annovar from VCF input?
6 months ago by Pierre Lindenbaum 164k
0
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0
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519
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Comment: Comment: Sam file Header problem
6 months ago by Pierre Lindenbaum 164k
2
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0
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437
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Comment: Comment: getting exon coordinates
updated 6 months ago by 147k • written 6 months ago by 164k
0
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1
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701
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Comment: Comment: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
6 months ago by Pierre Lindenbaum 164k
3
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4
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701
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finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
UTR masspec uORF peptide
updated 6 months ago by 147k • written 6 months ago by 164k
0
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1
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519
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Comment: Comment: Sam file Header problem
6 months ago by Pierre Lindenbaum 164k
0
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1
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1.5k
views
Comment: Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
6 months ago by Pierre Lindenbaum 164k
0
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1
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744
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Comment: Comment: Filtering VCF files based on VAF giving incorrect results
6 months ago by Pierre Lindenbaum 164k
0
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1
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1.5k
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Comment: Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
6 months ago by Pierre Lindenbaum 164k
1
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2
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511
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Answer: Answer: Genotyping sites with N in reference genome
6 months ago by Pierre Lindenbaum 164k
0
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1
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527
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Comment: Comment: Sequencing Depth (Read Depth) Calculations
6 months ago by Pierre Lindenbaum 164k
0
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0
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652
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Comment: Comment: Cannot install bwa-mem2 via conda
updated 6 months ago by 44k • written 6 months ago by 164k
0
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0
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735
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Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
6 months ago by Pierre Lindenbaum 164k
1
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0
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735
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Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
6 months ago by Pierre Lindenbaum 164k
0
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1
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735
views
Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
6 months ago by Pierre Lindenbaum 164k
12,797 results • Page 7 of 256
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