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1
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Comment: C: Chip-seq mapping (using bowtie2 & tophat2) What's different ?
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 3.1k
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Answer: A: DESEQ2: How can I convert ensembl gene id's to HGNC gene names.
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 3.1k
2
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1
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2.2k
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Answer: A: How ViennaRNA Package deal with character other than AUGC in RNA secondary struc
updated 5.0 years ago by 44k • written 9.2 years ago by ★ 3.1k
1
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8.2k
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Comment: C: Maths implications: log2 transformation before or after normalisation
5.1 years ago by Martombo ★ 3.1k
3
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0
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3.0k
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Answer: C: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a mast
5.1 years ago by Martombo ★ 3.1k
0
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1
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3.7k
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Comment: C: gene_bodyCoverage.py No usable output...why?
5.2 years ago by Martombo ★ 3.1k
1
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1
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3.7k
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Comment: C: gene_bodyCoverage.py No usable output...why?
5.2 years ago by Martombo ★ 3.1k
0
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1
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3.7k
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Comment: C: gene_bodyCoverage.py No usable output...why?
5.2 years ago by Martombo ★ 3.1k
3
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0
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3.4k
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Comment: C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
5.3 years ago by Martombo ★ 3.1k
2
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1
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2.1k
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Comment: C: Differential Expression Analysis with batches which have different biological gr
5.4 years ago by Martombo ★ 3.1k
2
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1
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2.7k
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Answer: C: Iteration to count the number of raw reads
5.4 years ago by Martombo ★ 3.1k
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1
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2.7k
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Comment: C: Iteration to count the number of raw reads
5.4 years ago by Martombo ★ 3.1k
1
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1
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3.8k
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Comment: C: Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
5.4 years ago by Martombo ★ 3.1k
1
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0
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2.2k
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Comment: C: Deseq2 positive results for genes highly variable between replicates
5.5 years ago by Martombo ★ 3.1k
0
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0
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1.7k
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Comment: C: Error in some hog codes using pyham
5.5 years ago by Martombo ★ 3.1k
0
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1
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3.4k
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Comment: C: Removing adaptors from smallRNA seq data
5.5 years ago by Martombo ★ 3.1k
0
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1
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3.4k
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Comment: C: Removing adaptors from smallRNA seq data
5.5 years ago by Martombo ★ 3.1k
0
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1
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2.0k
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Comment: C: Selecting the consensus/overlapped genes from the DE study
5.5 years ago by Martombo ★ 3.1k
0
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1
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1.8k
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Comment: C: Finding the best combination of covarites in a multivariate linear regression
5.5 years ago by Martombo ★ 3.1k
1
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1
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12k
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Comment: C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
5.5 years ago by Martombo ★ 3.1k
1
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0
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2.4k
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Comment: C: Question about differentially expressed genes selection for low sample size data
5.6 years ago by Martombo ★ 3.1k
0
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1
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2.2k
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Comment: C: Differential analysis using cell-line data with replicate information
5.6 years ago by Martombo ★ 3.1k
1
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0
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866
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Answer: A: Co-expression analysis for genes coexpressed with gene X, genes X and Y, etc.
5.6 years ago by Martombo ★ 3.1k
1
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0
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5.9k
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Comment: C: natural log used in Seurat for differential expression
5.8 years ago by Martombo ★ 3.1k
0
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1
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11k
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Comment: C: Read count difference between STAR and Bowtie
6.0 years ago by Martombo ★ 3.1k
0
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1
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3.7k
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Comment: C: STAR Splice Junctions normalization
6.0 years ago by Martombo ★ 3.1k
0
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0
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1.5k
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Answer: A: RNA-binding motifs matching
6.0 years ago by Martombo ★ 3.1k
1
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0
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914
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Answer: A: comparing two ratios in RNASeq data
6.0 years ago by Martombo ★ 3.1k
2
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1
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9.5k
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
6.1 years ago by Martombo ★ 3.1k
0
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0
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9.5k
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
6.1 years ago by Martombo ★ 3.1k
3
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0
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2.0k
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Answer: A: Quantifying repetitive elements in RNA-seqs
6.1 years ago by Martombo ★ 3.1k
2
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1
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2.2k
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Answer: C: DESEQ2 control vs multiple treatment
6.1 years ago by Martombo ★ 3.1k
1
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1
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2.1k
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Comment: C: Find out the mutation type from TCGA data
6.1 years ago by Martombo ★ 3.1k
0
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0
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1.3k
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Comment: C: For Generating PPI
6.2 years ago by Martombo ★ 3.1k
0
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1
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2.4k
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Comment: C: Low mapping percentage with TopHat
6.2 years ago by Martombo ★ 3.1k
4
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1
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2.0k
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Comment: C: unable to count reads that are aligned to coding region
6.2 years ago by Martombo ★ 3.1k
1
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0
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13k
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Comment: C: GSEA on single-cell cluster data
6.2 years ago by Martombo ★ 3.1k
0
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0
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2.0k
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Comment: C: RSEM tool installation error
6.2 years ago by Martombo ★ 3.1k
2
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1
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2.2k
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Comment: C: Advice on running a differential expression analysis on patients with slightly d
6.2 years ago by Martombo ★ 3.1k
1
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1
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3.3k
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Comment: C: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
6.2 years ago by Martombo ★ 3.1k
1
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1
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3.3k
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Comment: C: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
6.2 years ago by Martombo ★ 3.1k
0
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1
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2.9k
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Comment: C: RNA-seq analysis of two species
6.2 years ago by Martombo ★ 3.1k
1
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1
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4.0k
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Comment: C: STAR index doesn't finish
6.2 years ago by Martombo ★ 3.1k
0
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1
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2.6k
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Comment: C: Performing differential expression study on isoforms
6.2 years ago by Martombo ★ 3.1k
0
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1
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2.6k
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Comment: C: Performing differential expression study on isoforms
6.2 years ago by Martombo ★ 3.1k
2
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0
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2.6k
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Answer: A: The tools to plot the saturation curve for RNA-Seq
6.2 years ago by Martombo ★ 3.1k
1
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1
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2.0k
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Comment: C: Selecting the consensus/overlapped genes from the DE study
6.2 years ago by Martombo ★ 3.1k
1
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0
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4.8k
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Comment: C: Is it possible to analyze differentially expressed genes without sample replicat
6.2 years ago by Martombo ★ 3.1k
0
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0
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3.9k
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Comment: C: Biological variation within replicate groups, not much DE
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 3.1k
1
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0
replies
907
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Comment: C: GO Enrichment for non model orlganisms
6.2 years ago by Martombo ★ 3.1k
324 results • Page 2 of 7
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