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Comment: C: DESeq2: Find differentially expressed genes specific to one condition
7.5 years ago by Martombo ★ 3.1k
1
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1
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7.2k
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Answer: A: DESeq2: Find differentially expressed genes specific to one condition
7.5 years ago by Martombo ★ 3.1k
0
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1
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4.7k
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Comment: C: Strange MA-plot using DESeq2
7.9 years ago by Martombo ★ 3.1k
3
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3
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7.8k
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different output format in Clustal-Omega
bash Clustal
updated 20 months ago by 44k • written 10.5 years ago by ★ 3.1k
0
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1
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2.9k
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Comment: C: Job1: Bioinformatician/Computational biologist Postdoc Position at the European
8.0 years ago by Martombo ★ 3.1k
3
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0
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30k
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Comment: C: GO enrichment analysis using R
8.0 years ago by Martombo ★ 3.1k
6
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2
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9.0k
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Answer: A: How basemean/basemeanA/basemeanB and log2foldchange are counted in DESeq2 ?
8.1 years ago by Martombo ★ 3.1k
0
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0
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3.0k
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Comment: C: ViennaPackage define output file name and location(RNAplfold)
8.2 years ago by Martombo ★ 3.1k
0
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0
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3.9k
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Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
8.4 years ago by Martombo ★ 3.1k
2
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1
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3.9k
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Answer: A: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
8.4 years ago by Martombo ★ 3.1k
0
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0
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4.0k
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Comment: C: Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
8.5 years ago by Martombo ★ 3.1k
2
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1
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2.3k
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Answer: A: CLIP-Seq read density
8.5 years ago by Martombo ★ 3.1k
1
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0
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2.5k
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Comment: C: intergenic reads in RNAseq
8.5 years ago by Martombo ★ 3.1k
0
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1
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2.3k
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Comment: C: Are these reads all PCR replicates ?
8.7 years ago by Martombo ★ 3.1k
0
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0
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8.3k
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Answer: Answer: How to remove adapters using Trimmomatic software?
updated 2.4 years ago by 44k • written 8.8 years ago by ★ 3.1k
0
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0
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5.4k
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Comment: C: Cufflinks bias correction and DESEq2
8.8 years ago by Martombo ★ 3.1k
0
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1
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5.4k
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Comment: C: Cufflinks bias correction and DESEq2
8.8 years ago by Martombo ★ 3.1k
1
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3
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5.1k
views
Comment: C: Is there a limit to the p-value & q-value for cuffdiff gene_exp.diff?
8.8 years ago by Martombo ★ 3.1k
4
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1
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5.1k
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Answer: C: Is there a limit to the p-value & q-value for cuffdiff gene_exp.diff?
8.8 years ago by Martombo ★ 3.1k
0
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1
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5.0k
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Answer: A: how to add a pseduo gene into a GTF file?
8.9 years ago by Martombo ★ 3.1k
0
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0
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1.8k
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Comment: C: Issues with strandedness, flags, and generating a count matrix using R. Please h
9.0 years ago by Martombo ★ 3.1k
1
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1
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4.7k
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Comment: C: How can find a list of proteins are neighbour?
9.0 years ago by Martombo ★ 3.1k
3
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1
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2.2k
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Answer: Answer: featureCounts isn't working how I expect
updated 3.7 years ago by 44k • written 9.0 years ago by ★ 3.1k
1
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1
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2.5k
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Comment: C: No common nodes between Three centrality measure of PPI network in top 200 node
9.0 years ago by Martombo ★ 3.1k
0
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0
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1.6k
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Comment: C: Recognize rRNA remove protocol from gene expression profile
9.0 years ago by Martombo ★ 3.1k
0
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0
replies
4.1k
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Comment: C: Computing Fold Change Using Z scores
9.0 years ago by Martombo ★ 3.1k
0
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1
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3.3k
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Comment: C: Meta analysis of RNA-seq data
9.0 years ago by Martombo ★ 3.1k
0
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1
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3.7k
views
Comment: C: stop codon identification
9.1 years ago by Martombo ★ 3.1k
0
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0
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3.7k
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Comment: C: stop codon identification
9.1 years ago by Martombo ★ 3.1k
0
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0
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2.6k
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Comment: C: Inconsistent display of GFF files in IGB
9.1 years ago by Martombo ★ 3.1k
1
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1
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2.6k
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Comment: C: Inconsistent display of GFF files in IGB
9.1 years ago by Martombo ★ 3.1k
0
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0
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2.1k
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Comment: C: human Natural Antisense Transcript database
9.1 years ago by Martombo ★ 3.1k
0
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1
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2.1k
views
human Natural Antisense Transcript database
database
9.1 years ago by Martombo ★ 3.1k
0
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1
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4.3k
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Comment: C: DESeq2 for differential expression analysis of RNA-seq datawith few samples per
9.1 years ago by Martombo ★ 3.1k
0
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1
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4.4k
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Comment: C: Annotating RNA-Seq exon junctions
9.1 years ago by Martombo ★ 3.1k
3
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1
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2.1k
views
Answer: C: transcripts.gtf files size vs. merged.gtf
9.1 years ago by Martombo ★ 3.1k
0
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0
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3.6k
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Comment: C: HTSeq: Error at the end of HTSeq analysis and an output of .count file with 0 by
9.1 years ago by Martombo ★ 3.1k
1
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0
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3.1k
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Comment: C: Identify a sequence as plasmid
9.1 years ago by Martombo ★ 3.1k
2
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0
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2.9k
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Comment: C: Cufflinks bias correction
9.1 years ago by Martombo ★ 3.1k
3
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0
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3.2k
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Answer: A: DESeq estimateSize factor, if one sample has 0
9.1 years ago by Martombo ★ 3.1k
0
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0
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5.6k
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Comment: C: GO analysis and the universe set of genes
9.2 years ago by Martombo ★ 3.1k
0
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1
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5.6k
views
Answer: A: GO analysis and the universe set of genes
9.2 years ago by Martombo ★ 3.1k
0
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0
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2.2k
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Comment: C: How ViennaRNA Package deal with character other than AUGC in RNA secondary struc
9.2 years ago by Martombo ★ 3.1k
1
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0
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4.8k
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Answer: A: -1 exon frame in UCSC gene table
9.2 years ago by Martombo ★ 3.1k
1
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1
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1.8k
views
Comment: C: Should zero expression ever be tested for significance?
9.2 years ago by Martombo ★ 3.1k
0
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1
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2.8k
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Answer: Answer: Best tool for Quality Assessment for Next Generation Sequencing Data?
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 3.1k
0
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0
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3.2k
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Comment: C: Normalizing small RNA Seq Reads
9.2 years ago by Martombo ★ 3.1k
0
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1
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3.2k
views
Comment: C: Normalizing small RNA Seq Reads
9.2 years ago by Martombo ★ 3.1k
0
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0
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2.2k
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Comment: C: Bioinformatics position at University of Bologna
9.2 years ago by Martombo ★ 3.1k
0
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0
replies
3.6k
views
Comment: C: DeSeq2 data transformation for visualization
9.2 years ago by Martombo ★ 3.1k
324 results • Page 4 of 7
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