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12k
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Comment: C: correcting for a batch in DESeq2
9.2 years ago by Martombo ★ 3.1k
0
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1
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12k
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Comment: C: correcting for a batch in DESeq2
9.2 years ago by Martombo ★ 3.1k
0
votes
1
reply
12k
views
Answer: Answer: correcting for a batch in DESeq2
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 3.1k
1
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0
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3.3k
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Comment: C: DEXSeq run does not produce results
9.2 years ago by Martombo ★ 3.1k
0
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0
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3.0k
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Comment: Comment: Tophat with mm10 gencode
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 3.1k
0
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0
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1.5k
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Comment: C: Demultiplexing at 3'
9.2 years ago by Martombo ★ 3.1k
0
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0
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5.5k
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Comment: C: Regarding 3D PCA Plot in R
9.2 years ago by Martombo ★ 3.1k
37
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11
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35k
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6 follow
Sjdboverhang Option In Star
updated 16 months ago by ▴ 90 • written 10.8 years ago by ★ 3.1k
2
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0
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1.8k
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Comment: C: integrated high throughout sequencing data sets in galaxy
9.3 years ago by Martombo ★ 3.1k
1
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0
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3.8k
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Answer: A: Gene in ncbi
9.3 years ago by Martombo ★ 3.1k
0
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0
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2.8k
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Comment: Comment: Liftover from mm9 to hg19 to identify conserved repetitive elements
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.1k
2
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1
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3.0k
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Comment: C: ViennaPackage define output file name and location(RNAplfold)
9.4 years ago by Martombo ★ 3.1k
1
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2
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3.0k
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Comment: C: ViennaPackage define output file name and location(RNAplfold)
9.4 years ago by Martombo ★ 3.1k
0
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0
replies
3.3k
views
Comment: Comment: How to discover new mutations in a derived strain relative to a reference genome
updated 2.1 years ago by 44k • written 9.4 years ago by ★ 3.1k
1
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0
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13k
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Comment: C: Hg19 regions for Intergenic, Promoters, Enhancer, Exon, Intron, 5-UTR, 3-UTR and
9.4 years ago by Martombo ★ 3.1k
0
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1
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3.3k
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Comment: C: How to discover new mutations in a derived strain relative to a reference genome
9.4 years ago by Martombo ★ 3.1k
1
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0
replies
6.7k
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Comment: Comment: About DESeq2 logFC and pvalue
updated 2.1 years ago by 44k • written 9.4 years ago by ★ 3.1k
0
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0
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13k
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Comment: C: Hg19 regions for Promoters, Enhancer, Exon, Intron and so on
9.4 years ago by Martombo ★ 3.1k
2
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1
reply
5.6k
views
Comment: C: MA plots DESeq: strange MA plots
9.4 years ago by Martombo ★ 3.1k
0
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0
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5.6k
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Comment: Comment: MA plots DESeq: strange MA plots
updated 24 months ago by 44k • written 9.4 years ago by ★ 3.1k
1
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1
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5.6k
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Comment: Comment: MA plots DESeq: strange MA plots
updated 24 months ago by 44k • written 9.4 years ago by ★ 3.1k
1
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0
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14k
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Comment: C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
9.4 years ago by Martombo ★ 3.1k
2
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1
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14k
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Comment: C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
9.4 years ago by Martombo ★ 3.1k
0
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1
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2.9k
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Comment: C: Crucial difference between dexseq and HTSeq-count
9.4 years ago by Martombo ★ 3.1k
1
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0
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3.6k
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Comment: C: DGE of RNAseq data using DeSEQ2 - need help with input file
9.4 years ago by Martombo ★ 3.1k
0
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0
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3.6k
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Comment: C: DGE of RNAseq data using DeSEQ2 - need help with input file
9.4 years ago by Martombo ★ 3.1k
0
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0
replies
3.7k
views
Comment: Comment: Tophat failed at 'Mapping left_kept_reads to transcriptome'
updated 23 months ago by 44k • written 9.5 years ago by ★ 3.1k
0
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0
replies
4.6k
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Comment: Comment: Trimmomatic does not trim custom adapters in palindrome mode
updated 23 months ago by 44k • written 9.5 years ago by ★ 3.1k
0
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1
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3.4k
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Comment: Comment: QuasiSeq vs. DESeq2 results
updated 23 months ago by 44k • written 9.5 years ago by ★ 3.1k
0
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1
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3.4k
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Comment: C: QuasiSeq vs. DESeq2 results
9.5 years ago by Martombo ★ 3.1k
1
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0
replies
3.7k
views
Answer: Answer: Hi blog how to calculate differntial expression analysis if thre is no replicate
updated 22 months ago by 44k • written 9.5 years ago by ★ 3.1k
1
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1
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3.8k
views
Comment: Comment: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 2.4 years ago by 44k • written 9.5 years ago by ★ 3.1k
1
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1
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3.8k
views
Answer: Answer: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 2.4 years ago by 44k • written 9.5 years ago by ★ 3.1k
3
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2
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2.9k
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Answer: Answer: replace first column based on third column in modeled PDB file
updated 22 months ago by 44k • written 9.5 years ago by ★ 3.1k
0
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0
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2.4k
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Comment: Comment: Mapping low coverage RNAseq at gene-level rather than exon level
updated 22 months ago by 44k • written 9.5 years ago by ★ 3.1k
0
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1
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3.1k
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Comment: Comment: Unexpected RNASeq result in shRNA experiment
updated 22 months ago by 44k • written 9.6 years ago by ★ 3.1k
0
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1
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3.1k
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Comment: Comment: Unexpected RNASeq result in shRNA experiment
updated 22 months ago by 44k • written 9.6 years ago by ★ 3.1k
0
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1
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3.1k
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Comment: C: How to view and analyze BAM files from SOLiD Bioscope alignment
9.6 years ago by Martombo ★ 3.1k
0
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1
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3.1k
views
Comment: Comment: How to view and analyze BAM files from SOLiD Bioscope alignment
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 3.1k
2
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1
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3.1k
views
Answer: C: How to view and analyze BAM files from SOLiD Bioscope alignment
9.6 years ago by Martombo ★ 3.1k
0
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0
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5.7k
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Comment: C: What is the best way to handle unmapped reads from RNA-Seq data
9.6 years ago by Martombo ★ 3.1k
2
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1
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3.8k
views
Answer: Answer: Deseq2 error using HTSeq input for 10 samples with 3 replicates each
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 3.1k
1
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0
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3.0k
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Comment: C: Why is the quality of contigs better with a merged file than separated files? Us
9.6 years ago by Martombo ★ 3.1k
2
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1
reply
3.0k
views
Answer: A: Why is the quality of contigs better with a merged file than separated files? Us
9.6 years ago by Martombo ★ 3.1k
7
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1
reply
7.4k
views
Answer: Answer: What is the normalization w.r.t to gene expression counts or values?
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 3.1k
0
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0
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7.4k
views
Comment: Comment: What is the normalization w.r.t to gene expression counts or values?
updated 2.6 years ago by 44k • written 9.6 years ago by ★ 3.1k
1
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1
reply
1.8k
views
Comment: Comment: mapping ensembl gene id to an array id
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 3.1k
5
votes
1
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4.0k
views
Answer: Answer: Tophat --max-multihits option
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 3.1k
1
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0
replies
1.9k
views
Answer: Answer: minor introns database
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 3.1k
0
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1
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2.8k
views
Answer: Answer: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 3.1k
324 results • Page 5 of 7
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