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Comment: C: Batch download genome feature file by RefSeq
3.8 years ago by vkkodali_ncbi ★ 3.8k
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0
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915
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Answer: A: Extract CDS product from Genbank file with coordinate range
3.8 years ago by vkkodali_ncbi ★ 3.8k
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0
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Comment: C: Convert transcript coordinates to genomic coordinates
3.8 years ago by vkkodali_ncbi ★ 3.8k
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4
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2.0k
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Convert transcript coordinates to genomic coordinates
alignment
3.8 years ago by vkkodali_ncbi ★ 3.8k
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0
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2.0k
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Comment: C: Convert transcript coordinates to genomic coordinates
3.8 years ago by vkkodali_ncbi ★ 3.8k
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0
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1.2k
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Comment: C: Server to host bam files
3.8 years ago by vkkodali_ncbi ★ 3.8k
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0
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1.2k
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Comment: C: Server to host bam files
3.8 years ago by vkkodali_ncbi ★ 3.8k
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4
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1.2k
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Server to host bam files
RNA-Seq alignment bam
3.8 years ago by vkkodali_ncbi ★ 3.8k
1
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1
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2.1k
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Answer: C: Stringtie transcripts to Gene Name
3.9 years ago by vkkodali_ncbi ★ 3.8k
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1
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2.1k
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Comment: C: Stringtie transcripts to Gene Name
3.9 years ago by vkkodali_ncbi ★ 3.8k
1
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0
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917
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Answer: A: NCBI Genome Workbench tool
3.9 years ago by vkkodali_ncbi ★ 3.8k
3
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3.5k
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Answer: A: downloading full genbank file using Entrez efetch
3.9 years ago by vkkodali_ncbi ★ 3.8k
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0
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1.1k
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Answer: A: Get corresponding Biosample accessions for very large list of SRA accesions?
3.9 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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1.1k
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Comment: C: What kinds of gene ID types like below??
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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1
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1.1k
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Answer: C: What kinds of gene ID types like below??
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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0
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2.8k
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Answer: A: Is there any tool/API available to convert GTF/GFF to JSON format?
4.0 years ago by vkkodali_ncbi ★ 3.8k
2
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0
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5.8k
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Answer: A: Easiest way to homogenize gene aliases across datasets?
updated 4.0 years ago by 35k • written 4.0 years ago by ★ 3.8k
1
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0
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4.6k
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Comment: C: converting RefSeq Protein (NCBI) accession numbers to Gene Symbol
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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2
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4.6k
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Answer: A: converting RefSeq Protein (NCBI) accession numbers to Gene Symbol
4.0 years ago by vkkodali_ncbi ★ 3.8k
0
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1
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5.8k
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Comment: C: Easiest way to homogenize gene aliases across datasets?
4.0 years ago by vkkodali_ncbi ★ 3.8k
0
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1
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6.0k
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Comment: C: Conversion of gene id to Refseq/gene symbol
4.0 years ago by vkkodali_ncbi ★ 3.8k
2
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1
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6.0k
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Answer: A: Conversion of gene id to Refseq/gene symbol
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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1
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3.5k
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Answer: A: how to batch download SARS-CoV-2 sequences data from NCBI?
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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0
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2.0k
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Answer: A: Best way to get gene IDs for Salmon transcript output
4.0 years ago by vkkodali_ncbi ★ 3.8k
0
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1
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1.7k
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Comment: C: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
4.0 years ago by vkkodali_ncbi ★ 3.8k
2
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1
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1.7k
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Answer: A: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6)
4.0 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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910
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Comment: C: NCBI gtf contains same trasncript id for some trasncripts and giving trouble on
4.0 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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763
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Comment: C: Mapping Grch38 Genomic DNA Positions to RefSeq transcripts
4.0 years ago by vkkodali_ncbi ★ 3.8k
12
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2
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16k
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Answer: A: How to download genome assemblies from NCBI with a list of GCA identifiers?
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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1
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16k
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Comment: C: How to download genome assemblies from NCBI with a list of GCA identifiers?
4.0 years ago by vkkodali_ncbi ★ 3.8k
2
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0
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1.2k
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Comment: C: How to get summary for acc.no. not starting with 'WP_' ?
4.0 years ago by vkkodali_ncbi ★ 3.8k
3
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2
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1.4k
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Answer: A: Sequence Retrieval of SARS-CoV Complete Genomes
4.0 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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1.4k
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Comment: C: Sequence Retrieval of SARS-CoV Complete Genomes
4.0 years ago by vkkodali_ncbi ★ 3.8k
1
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1
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2.5k
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Answer: C: Getting a gff file from NCBI
4.1 years ago by vkkodali_ncbi ★ 3.8k
0
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1
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2.5k
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Comment: C: Getting a gff file from NCBI
4.1 years ago by vkkodali_ncbi ★ 3.8k
1
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2
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2.7k
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Comment: C: Elink to get PMID associated with a BioProject or SRA entry
4.1 years ago by vkkodali_ncbi ★ 3.8k
0
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2
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2.7k
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Comment: C: Elink to get PMID associated with a BioProject or SRA entry
4.1 years ago by vkkodali_ncbi ★ 3.8k
1
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1
reply
2.0k
views
Answer: A: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
updated 4.1 years ago by 147k • written 4.1 years ago by ★ 3.8k
0
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2
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4.2k
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Comment: C: Batch Entrez outputs nothing
4.2 years ago by vkkodali_ncbi ★ 3.8k
1
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0
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5.7k
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Comment: C: How to retrieve sets of protein sequences?
4.2 years ago by vkkodali_ncbi ★ 3.8k
0
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1
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5.7k
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Comment: C: How to retrieve sets of protein sequences?
4.2 years ago by vkkodali_ncbi ★ 3.8k
0
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1
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3.0k
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Comment: C: BAM to FASTQ discards most reads as singletons though flagstat says otherwise
4.3 years ago by vkkodali_ncbi ★ 3.8k
3
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1
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3.0k
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Answer: C: BAM to FASTQ discards most reads as singletons though flagstat says otherwise
4.3 years ago by vkkodali_ncbi ★ 3.8k
7
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5
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3.0k
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BAM to FASTQ discards most reads as singletons though flagstat says otherwise
samtools bam
4.3 years ago by vkkodali_ncbi ★ 3.8k
3
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0
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1.1k
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Answer: A: Unkown NCBI genome chromosomes
4.3 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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1.2k
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Answer: A: Create a database of RefSeq genes
4.3 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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1.3k
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Comment: C: Retrieve reference sequence GenBank for mRNA transcript of interest
4.4 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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1.2k
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Comment: C: Problem in subsetting a gtf based on ids in another file
4.4 years ago by vkkodali_ncbi ★ 3.8k
0
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0
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863
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Comment: C: About RefSeq Accession Number trasformation
4.4 years ago by vkkodali_ncbi ★ 3.8k
0
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1
reply
863
views
Comment: C: About RefSeq Accession Number trasformation
4.4 years ago by vkkodali_ncbi ★ 3.8k
387 results • Page 3 of 8
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