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3
votes
2
replies
1.7k
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Extract out fasta sequences using sequence headers.
gene
updated 7.6 years ago by ▴ 840 • written 7.6 years ago by ▴ 350
0
votes
0
replies
1.1k
views
How can I effectively blast lncRNAs against my genome of interest?
blast
7.6 years ago by a.rex ▴ 350
0
votes
1
reply
1.7k
views
Comment: C: Will variance between the number of reads mapped in samples impact my differenti
7.6 years ago by a.rex ▴ 350
2
votes
3
replies
1.7k
views
Will variance between the number of reads mapped in samples impact my differential analysis?
RNA-Seq kallisto sleuth
updated 7.6 years ago by 102k • written 7.6 years ago by ▴ 350
4
votes
1
reply
4.6k
views
Using LRT and Wald test to filter differentially expressed loci in RNA-seq dataset
RNA-seq
updated 7.6 years ago by 104k • written 7.6 years ago by ▴ 350
0
votes
0
replies
4.1k
views
Answer: C: Using Kallisto and Sleuth for RNA-seq analysis - do I have to normalise before d
7.6 years ago by a.rex ▴ 350
1
vote
2
replies
4.1k
views
Using Kallisto and Sleuth for RNA-seq analysis - do I have to normalise before differential analysis?
RNA-Seq
7.6 years ago by a.rex ▴ 350
1
vote
0
replies
1.6k
views
identification of piRNA sequences from small RNA-seq data?
small RNA-seq pirna annotation
7.7 years ago by a.rex ▴ 350
0
votes
0
replies
3.5k
views
Comment: C: parse error with samtools
7.8 years ago by a.rex ▴ 350
5
votes
4
replies
3.5k
views
parse error with samtools
samtools linux parallel
7.8 years ago by a.rex ▴ 350
2
votes
2
replies
1.9k
views
ncbi blast results in multi-sequence fasta file
blast ncbi
updated 7.9 years ago by 5.3k • written 7.9 years ago by ▴ 350
2
votes
1
reply
2.5k
views
extract out intronic sequences from genome fasta file
genome
updated 7.9 years ago by 12k • written 7.9 years ago by ▴ 350
0
votes
0
replies
1.6k
views
mapping transcriptome to genome to find TSS/TES/(+/-)
mapping genome alignment
7.9 years ago by a.rex ▴ 350
5
votes
1
reply
1.4k
views
append to column in bedfile
bed
updated 20 months ago by 44k • written 7.9 years ago by ▴ 350
9
votes
8
replies
4.8k
views
mapping reads to repetitive elements in genome?
ChIP-seq alignment sequencing
updated 7.9 years ago by 55k • written 7.9 years ago by ▴ 350
0
votes
1
reply
4.8k
views
Comment: C: mapping reads to repetitive elements in genome?
7.9 years ago by a.rex ▴ 350
0
votes
1
reply
4.8k
views
Comment: C: mapping reads to repetitive elements in genome?
7.9 years ago by a.rex ▴ 350
0
votes
1
reply
4.8k
views
Comment: C: mapping reads to repetitive elements in genome?
7.9 years ago by a.rex ▴ 350
5
votes
2
replies
1.7k
views
intersection of two files
bedtools
updated 8.0 years ago by 36k • written 8.0 years ago by ▴ 350
1
vote
0
replies
1.5k
views
annotating transposons in transcriptome
repeatmasker transcriptome transposons
8.0 years ago by a.rex ▴ 350
2
votes
2
replies
1.9k
views
tab-delimited file - use in bedtools?
bed bedtools
updated 20 months ago by 44k • written 8.1 years ago by ▴ 350
0
votes
0
replies
2.1k
views
Comment: C: generating midpoints on a bedfile
8.1 years ago by a.rex ▴ 350
0
votes
1
reply
2.1k
views
Comment: C: generating midpoints on a bedfile
8.1 years ago by a.rex ▴ 350
3
votes
4
replies
2.1k
views
generating midpoints on a bedfile
bed bedtools
updated 20 months ago by 44k • written 8.1 years ago by ▴ 350
11
votes
6
replies
2.1k
views
parsing fasta file
fasta
updated 8.2 years ago by ▴ 60 • written 8.2 years ago by ▴ 350
2
votes
2
replies
1.8k
views
parsing bed file
parse python
updated 8.2 years ago by 47k • written 8.2 years ago by ▴ 350
0
votes
2
replies
2.0k
views
Answer: A: parsing alignment file
8.2 years ago by a.rex ▴ 350
5
votes
4
replies
2.0k
views
parsing alignment file
genome python parsing
8.2 years ago by a.rex ▴ 350
5
votes
7
replies
3.1k
views
parsing through gtf file
gene
updated 8.3 years ago by 12k • written 8.3 years ago by ▴ 350
7
votes
1
reply
7.7k
views
createRepeatLandscape in RepeatMasker
RepeatMasker
8.3 years ago by a.rex ▴ 350
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